source: cpp/frams/genetics

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Diff Rev Age Author Log Message
(edit) @1056   4 years Maciej Komosinski Cosmetic
(edit) @1039   4 years Maciej Komosinski Removed Part's "visual thickness" property
(edit) @1032   4 years Maciej Komosinski - fS: comma as an intuitive separator in genotype instead of weird …
(edit) @1030   4 years Maciej Komosinski fS: refactoring
(edit) @1029   4 years Maciej Komosinski fL: more legal characters allowed in syntax coloring
(edit) @1023   4 years Maciej Komosinski Added GenoOperators::calculateSolidVolume(Part)
(edit) @1017   4 years Maciej Komosinski fS: faster collision detection, depends on "geometry" algorithms
(edit) @1006   4 years Maciej Komosinski Improved the fS encoding
(edit) @1005   4 years Maciej Komosinski Higher conformance with C++17, but gave up after missing M_PI, M_PI_2, …
(edit) @1000   4 years Maciej Komosinski Improved the fS encoding
(edit) @999   4 years Maciej Komosinski More consistent usage of "shapetype" (vs. "shape")
(edit) @994   4 years Maciej Komosinski Cosmetic
(edit) @991   4 years Maciej Komosinski Updated target genetic format for fF (foraminifera) genetic encoding …
(edit) @988   4 years Maciej Komosinski Building a Model from Geno now fails when Model.shape is incompatible …
(edit) @981   4 years Maciej Komosinski Fixed misleading indentation
(edit) @977   4 years Maciej Komosinski Renamed functions for consistency; added an example of using …
(edit) @976   4 years Maciej Komosinski Renamed three "solid-compatible" receptors to have more informative names
(edit) @974   4 years Maciej Komosinski Renamed all genooper paramtab variables to be consistent with the …
(edit) @973   4 years Maciej Komosinski Increased SString and std::string compatibility: introduced length(), …
(edit) @972   4 years Maciej Komosinski - separate "0" and "0s" formats (for SHAPE_BALL_AND_STICK and …
(edit) @969   4 years Maciej Komosinski fS: preserved volume during shape-type changes
(edit) @968   4 years Maciej Komosinski Introduced a separate function to mutate neuron connection weight
(edit) @967   4 years Maciej Komosinski Improved names of functions that mutate neuron properties and improved docs
(edit) @966   4 years Maciej Komosinski Cosmetic
(edit) @965   5 years Maciej Komosinski Added a function to print genotypes in the LaTeX format, preserving …
(edit) @961   5 years Maciej Komosinski Cosmetic
(edit) @960   5 years Maciej Komosinski Simplified code and fixed a bug where all existing non-default …
(edit) @959   5 years Maciej Komosinski Added a high-level neuron mutation function
(edit) @958   5 years Maciej Komosinski Added the fS genetic encoding (for solids)
(edit) @957   5 years Maciej Komosinski Replace magic "100" with GenoOperators::NEUROCLASS_PROP_OFFSET
(edit) @955   5 years Maciej Komosinski Genetic format ID becomes a string (no longer limited to a single …
(edit) @954   5 years Maciej Komosinski Fixed genotype returned on conversion error
(edit) @952   5 years Maciej Komosinski Added new receptors (Gp:"gyroscope" on a Part, Tp:Touch-proximity and …
(edit) @938   5 years Maciej Komosinski Set "M" solid muscle neuron class active by default
(edit) @935   5 years Maciej Komosinski Utility functions that provide a set of all neuron classes fulfilling …
(edit) @899   5 years Maciej Komosinski Code formatting
(edit) @896   5 years Maciej Komosinski Replaced #defined macros for popular random-related operations with …
(edit) @857   6 years Maciej Komosinski Initialized variables in all cases to make potential errors evident
(edit) @853   6 years Maciej Komosinski The official C++17 fallthrough? attribute instead of comments no break
(edit) @841   6 years Maciej Komosinski Updated #includes after splitting stl-util into util-stl, util-file …
(edit) @835   6 years Maciej Komosinski ISO C++17 compliance including NULL, nullptr, templates and pointer …
(edit) @831   6 years Maciej Komosinski Fixed broken neuron creation (missing argument - regression from r760, …
(edit) @830   6 years Maciej Komosinski "%ld" replaced with "%d" because it refers to int
(edit) @829   6 years Maciej Komosinski Removed unnecessary cast, "long" is equivalent to "int" in our compilations
(edit) @821   6 years Maciej Komosinski Performance and stability improvements in fB, fH, and fL; improved …
(edit) @809   7 years Maciej Komosinski Fixed a signed/unsigned warning
(edit) @808   7 years Maciej Komosinski New option for mutation in numerical encoding fn: mutate all variables …
(edit) @804   7 years Maciej Komosinski Fixed memory leak and uninitialized int
(edit) @803   7 years Maciej Komosinski Performance improvements, including avoiding unnecessary passing of …
(edit) @802   7 years Maciej Komosinski Crossing over with less bloat, but still biologically-inspired
(edit) @801   7 years Maciej Komosinski Added a helper function that counts active neuron classes
(edit) @797   7 years Maciej Komosinski A more complete implementation of fB, fH, fL
(edit) @788   7 years Maciej Komosinski Fixed #include filename for f8 converter
(edit) @787   7 years Maciej Komosinski Removed a comment; sprintf() gives more control and precision than …
(edit) @783   7 years Maciej Komosinski Removed the unused "info" field and fixed a bug with incorrect …
(edit) @780   7 years Maciej Komosinski Added sources for genetic encodings fB, fH, fL
(edit) @779   7 years Maciej Komosinski Unified file names of all files involved in genetic conversions and …
(edit) @777   7 years Maciej Komosinski Fixed a typo
(edit) @776   7 years Maciej Komosinski Removed extra checkpoint
(edit) @774   7 years Maciej Komosinski Removed unused "state" field (issue number 19), improved docs (issues …
(edit) @773   7 years Maciej Komosinski Improved styling implementation, fixes issue number 18 [refs #62]
(edit) @772   7 years Maciej Komosinski Unified #define modifiers in f1 and f4, fixes issue number 16 [refs #62]
(edit) @771   7 years Maciej Komosinski Added color and size modifiers in f4; avoided unnecessary conditions …
(edit) @770   7 years Maciej Komosinski Avoided "min" and "max" as variable names, fixes issue 22 [refs #62]
(edit) @768   7 years Maciej Komosinski Reverted to 100x repeat-until-valid-mutation, required due to how …
(edit) @767   7 years Maciej Komosinski More strict parsing of the repetition counter; bug fixes; improved …
(edit) @765   7 years Maciej Komosinski Wider ranges of allowed values for mutation when only partial …
(edit) @764   7 years Maciej Komosinski Less deterministic (less absorbing) mutation for very narrow allowed …
(edit) @763   7 years Maciej Komosinski Higher precision when storing variable values
(edit) @762   7 years Maciej Komosinski Default sample values for a 2D problem, not 1D; added documentation …
(edit) @761   7 years Maciej Komosinski Introduced a macro for the number of times GenMan? tries to repeat a …
(edit) @760   7 years Maciej Komosinski - added support for new API for neuron types and their properties - …
(edit) @759   7 years Maciej Komosinski f1 and f4 stick properties unified and moved to a separate structure …
(edit) @758   7 years Maciej Komosinski Added a few useful functions providing lists of neurons with specific …
(edit) @757   7 years Maciej Komosinski Removed appending the original fn genotype as a comment in the …
(edit) @752   7 years Maciej Komosinski Mutation in the 'fn' encoding respects custom min,max,stddev for each …
(edit) @751   7 years Maciej Komosinski More versatile mutation function for numbers
(edit) @750   7 years Maciej Komosinski More proper definition of the crossover parameter
(edit) @749   7 years Maciej Komosinski Added a new function to linearly mix two vectors of real numbers
(edit) @748   7 years Maciej Komosinski Configured and activated the new "fn" genetic representation
(edit) @747   7 years Maciej Komosinski Added a new "fn" genetic representation (a vector of real numbers for …
(edit) @743   7 years Maciej Komosinski Introduced different function names in C++ instead of overloading …
(edit) @740   7 years Maciej Komosinski Added support for developmental phases ("checkpoints") to converters …
(edit) @736   7 years Maciej Komosinski Added the new "using_checkpoints" argument to genetic converters so …
(edit) @735   7 years Maciej Komosinski Base genotype converter is now abstract, which triggers compilation …
(edit) @732   7 years Maciej Komosinski Added support for "checkpoints" (intermediate phases of development of …
(edit) @726   7 years Maciej Komosinski - Changed Model::singleStepBuild() to Model::addFromString() to create …
(edit) @720   7 years Maciej Komosinski Param::save2() renamed to saveSingleLine(); unified Param::load() so …
(edit) @719   7 years Maciej Komosinski f1->f0 mapping maps ',' and ')' symbols to the branching Part (earlier …
(edit) @716   7 years Maciej Komosinski The f1 converter is now able to map more than one genotype character …
(edit) @715   7 years Maciej Komosinski GenMan?'s constructor now calls its setDefaults() to initialize all …
(edit) @714   7 years Maciej Komosinski - Setting default NeuroClass? active/genactive in preconfigured …
(edit) @676   7 years Maciej Komosinski Improved comments, removed unnecessary TODO regarding "Rr" modifiers
(edit) @675   7 years Maciej Komosinski Code formatting
(edit) @674   7 years Maciej Komosinski f4 modifiers implemented similarly to f1 modifiers, and a base for …
(edit) @673   7 years Maciej Komosinski Added three functions that may be useful in general
(edit) @672   7 years Maciej Komosinski More appropriate name for the "model_energy_max" variable
(edit) @671   7 years Maciej Komosinski Unified property names of f1 and f4; improved docs; 3.141 -> M_PI
(edit) @670   7 years Maciej Komosinski Improved variable names and docs
(edit) @669   7 years Maciej Komosinski As default foraminifera initial chamber radius in Framsticks units …
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