source: cpp/frams/genetics

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Diff Rev Age Author Log Message
(edit) @1235   19 months Maciej Komosinski Don't remove trailing '>' from genotypes
(edit) @1234   19 months Maciej Komosinski Simplify sequences of modifier genes, cancelling out antagonistic ones …
(edit) @1233   19 months Maciej Komosinski Added a function that simplifies a sequence of modifier genes (useful …
(edit) @1232   19 months Maciej Komosinski The validate() function may now attempt to repair genotypes without …
(edit) @1231   19 months Maciej Komosinski - Thanks to r1230, it is possible to detect (and repair=remove) junk …
(edit) @1230   19 months Maciej Komosinski Got rid of the (buggy) look-ahead function, made parsing stricter and …
(edit) @1229   19 months Maciej Komosinski - More strict parsing (reporting errors instead of implicit fixes) - …
(edit) @1228   19 months Maciej Komosinski Fixed a bug where an f4_Node tree that resulted from an f4 genotype …
(edit) @1227   19 months Maciej Komosinski Improvements in f4: - fixed a bug where newly created cells in a given …
(edit) @1226   19 months Maciej Komosinski - Added ShapeType? constraint to GenoOperators::parseNeuroClass() - …
(edit) @1216   20 months Maciej Komosinski Cosmetic
(edit) @1215   20 months Maciej Komosinski Less ambiguous names of counting functions in loggers: warning -> …
(edit) @1213   20 months Maciej Komosinski Fixed buffer overflow - the […] pattern in scanf() always stores the …
(edit) @1212   20 months Maciej Komosinski Properly attach muscles to joints and fix "Warning: …
(edit) @1186   2 years Maciej Komosinski For consistency with other numerical types, unlimited string length is …
(edit) @1183   2 years Maciej Komosinski Cosmetic
(edit) @1174   3 years Maciej Komosinski Cosmetic
(edit) @1167   3 years Maciej Komosinski Cosmetic
(edit) @1158   3 years Maciej Komosinski Cosmetic/minor improvements
(edit) @1157   3 years Maciej Komosinski Improved f9 mutation
(edit) @1130   4 years Maciej Komosinski Used std::min(), std::max() explicitly to avoid compiler confusion. …
(edit) @1108   4 years Maciej Komosinski Avoided potentially dangerous subtraction from unsigned int
(edit) @1075   4 years Maciej Komosinski Fixed dangerous size_t-1
(edit) @1056   4 years Maciej Komosinski Cosmetic
(edit) @1039   4 years Maciej Komosinski Removed Part's "visual thickness" property
(edit) @1032   4 years Maciej Komosinski - fS: comma as an intuitive separator in genotype instead of weird …
(edit) @1030   4 years Maciej Komosinski fS: refactoring
(edit) @1029   4 years Maciej Komosinski fL: more legal characters allowed in syntax coloring
(edit) @1023   4 years Maciej Komosinski Added GenoOperators::calculateSolidVolume(Part)
(edit) @1017   4 years Maciej Komosinski fS: faster collision detection, depends on "geometry" algorithms
(edit) @1006   4 years Maciej Komosinski Improved the fS encoding
(edit) @1005   4 years Maciej Komosinski Higher conformance with C++17, but gave up after missing M_PI, M_PI_2, …
(edit) @1000   4 years Maciej Komosinski Improved the fS encoding
(edit) @999   4 years Maciej Komosinski More consistent usage of "shapetype" (vs. "shape")
(edit) @994   4 years Maciej Komosinski Cosmetic
(edit) @991   4 years Maciej Komosinski Updated target genetic format for fF (foraminifera) genetic encoding …
(edit) @988   4 years Maciej Komosinski Building a Model from Geno now fails when Model.shape is incompatible …
(edit) @981   4 years Maciej Komosinski Fixed misleading indentation
(edit) @977   4 years Maciej Komosinski Renamed functions for consistency; added an example of using …
(edit) @976   4 years Maciej Komosinski Renamed three "solid-compatible" receptors to have more informative names
(edit) @974   4 years Maciej Komosinski Renamed all genooper paramtab variables to be consistent with the …
(edit) @973   4 years Maciej Komosinski Increased SString and std::string compatibility: introduced length(), …
(edit) @972   4 years Maciej Komosinski - separate "0" and "0s" formats (for SHAPE_BALL_AND_STICK and …
(edit) @969   4 years Maciej Komosinski fS: preserved volume during shape-type changes
(edit) @968   4 years Maciej Komosinski Introduced a separate function to mutate neuron connection weight
(edit) @967   4 years Maciej Komosinski Improved names of functions that mutate neuron properties and improved docs
(edit) @966   4 years Maciej Komosinski Cosmetic
(edit) @965   4 years Maciej Komosinski Added a function to print genotypes in the LaTeX format, preserving …
(edit) @961   4 years Maciej Komosinski Cosmetic
(edit) @960   4 years Maciej Komosinski Simplified code and fixed a bug where all existing non-default …
(edit) @959   4 years Maciej Komosinski Added a high-level neuron mutation function
(edit) @958   4 years Maciej Komosinski Added the fS genetic encoding (for solids)
(edit) @957   4 years Maciej Komosinski Replace magic "100" with GenoOperators::NEUROCLASS_PROP_OFFSET
(edit) @955   4 years Maciej Komosinski Genetic format ID becomes a string (no longer limited to a single …
(edit) @954   4 years Maciej Komosinski Fixed genotype returned on conversion error
(edit) @952   4 years Maciej Komosinski Added new receptors (Gp:"gyroscope" on a Part, Tp:Touch-proximity and …
(edit) @938   4 years Maciej Komosinski Set "M" solid muscle neuron class active by default
(edit) @935   4 years Maciej Komosinski Utility functions that provide a set of all neuron classes fulfilling …
(edit) @899   5 years Maciej Komosinski Code formatting
(edit) @896   5 years Maciej Komosinski Replaced #defined macros for popular random-related operations with …
(edit) @857   6 years Maciej Komosinski Initialized variables in all cases to make potential errors evident
(edit) @853   6 years Maciej Komosinski The official C++17 fallthrough? attribute instead of comments no break
(edit) @841   6 years Maciej Komosinski Updated #includes after splitting stl-util into util-stl, util-file …
(edit) @835   6 years Maciej Komosinski ISO C++17 compliance including NULL, nullptr, templates and pointer …
(edit) @831   6 years Maciej Komosinski Fixed broken neuron creation (missing argument - regression from r760, …
(edit) @830   6 years Maciej Komosinski "%ld" replaced with "%d" because it refers to int
(edit) @829   6 years Maciej Komosinski Removed unnecessary cast, "long" is equivalent to "int" in our compilations
(edit) @821   6 years Maciej Komosinski Performance and stability improvements in fB, fH, and fL; improved …
(edit) @809   6 years Maciej Komosinski Fixed a signed/unsigned warning
(edit) @808   6 years Maciej Komosinski New option for mutation in numerical encoding fn: mutate all variables …
(edit) @804   6 years Maciej Komosinski Fixed memory leak and uninitialized int
(edit) @803   6 years Maciej Komosinski Performance improvements, including avoiding unnecessary passing of …
(edit) @802   6 years Maciej Komosinski Crossing over with less bloat, but still biologically-inspired
(edit) @801   6 years Maciej Komosinski Added a helper function that counts active neuron classes
(edit) @797   6 years Maciej Komosinski A more complete implementation of fB, fH, fL
(edit) @788   6 years Maciej Komosinski Fixed #include filename for f8 converter
(edit) @787   7 years Maciej Komosinski Removed a comment; sprintf() gives more control and precision than …
(edit) @783   7 years Maciej Komosinski Removed the unused "info" field and fixed a bug with incorrect …
(edit) @780   7 years Maciej Komosinski Added sources for genetic encodings fB, fH, fL
(edit) @779   7 years Maciej Komosinski Unified file names of all files involved in genetic conversions and …
(edit) @777   7 years Maciej Komosinski Fixed a typo
(edit) @776   7 years Maciej Komosinski Removed extra checkpoint
(edit) @774   7 years Maciej Komosinski Removed unused "state" field (issue number 19), improved docs (issues …
(edit) @773   7 years Maciej Komosinski Improved styling implementation, fixes issue number 18 [refs #62]
(edit) @772   7 years Maciej Komosinski Unified #define modifiers in f1 and f4, fixes issue number 16 [refs #62]
(edit) @771   7 years Maciej Komosinski Added color and size modifiers in f4; avoided unnecessary conditions …
(edit) @770   7 years Maciej Komosinski Avoided "min" and "max" as variable names, fixes issue 22 [refs #62]
(edit) @768   7 years Maciej Komosinski Reverted to 100x repeat-until-valid-mutation, required due to how …
(edit) @767   7 years Maciej Komosinski More strict parsing of the repetition counter; bug fixes; improved …
(edit) @765   7 years Maciej Komosinski Wider ranges of allowed values for mutation when only partial …
(edit) @764   7 years Maciej Komosinski Less deterministic (less absorbing) mutation for very narrow allowed …
(edit) @763   7 years Maciej Komosinski Higher precision when storing variable values
(edit) @762   7 years Maciej Komosinski Default sample values for a 2D problem, not 1D; added documentation …
(edit) @761   7 years Maciej Komosinski Introduced a macro for the number of times GenMan? tries to repeat a …
(edit) @760   7 years Maciej Komosinski - added support for new API for neuron types and their properties - …
(edit) @759   7 years Maciej Komosinski f1 and f4 stick properties unified and moved to a separate structure …
(edit) @758   7 years Maciej Komosinski Added a few useful functions providing lists of neurons with specific …
(edit) @757   7 years Maciej Komosinski Removed appending the original fn genotype as a comment in the …
(edit) @752   7 years Maciej Komosinski Mutation in the 'fn' encoding respects custom min,max,stddev for each …
(edit) @751   7 years Maciej Komosinski More versatile mutation function for numbers
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