source: cpp/frams/genetics

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Diff Rev Age Author Log Message
(edit) @1174   7 months Maciej Komosinski Cosmetic
(edit) @1167   12 months Maciej Komosinski Cosmetic
(edit) @1158   14 months Maciej Komosinski Cosmetic/minor improvements
(edit) @1157   14 months Maciej Komosinski Improved f9 mutation
(edit) @1130   20 months Maciej Komosinski Used std::min(), std::max() explicitly to avoid compiler confusion. …
(edit) @1108   21 months Maciej Komosinski Avoided potentially dangerous subtraction from unsigned int
(edit) @1075   22 months Maciej Komosinski Fixed dangerous size_t-1
(edit) @1056   2 years Maciej Komosinski Cosmetic
(edit) @1039   2 years Maciej Komosinski Removed Part's "visual thickness" property
(edit) @1032   2 years Maciej Komosinski - fS: comma as an intuitive separator in genotype instead of weird …
(edit) @1030   2 years Maciej Komosinski fS: refactoring
(edit) @1029   2 years Maciej Komosinski fL: more legal characters allowed in syntax coloring
(edit) @1023   2 years Maciej Komosinski Added GenoOperators::calculateSolidVolume(Part)
(edit) @1017   2 years Maciej Komosinski fS: faster collision detection, depends on "geometry" algorithms
(edit) @1006   2 years Maciej Komosinski Improved the fS encoding
(edit) @1005   2 years Maciej Komosinski Higher conformance with C++17, but gave up after missing M_PI, M_PI_2, …
(edit) @1000   2 years Maciej Komosinski Improved the fS encoding
(edit) @999   2 years Maciej Komosinski More consistent usage of "shapetype" (vs. "shape")
(edit) @994   2 years Maciej Komosinski Cosmetic
(edit) @991   2 years Maciej Komosinski Updated target genetic format for fF (foraminifera) genetic encoding …
(edit) @988   2 years Maciej Komosinski Building a Model from Geno now fails when Model.shape is incompatible …
(edit) @981   2 years Maciej Komosinski Fixed misleading indentation
(edit) @977   2 years Maciej Komosinski Renamed functions for consistency; added an example of using …
(edit) @976   2 years Maciej Komosinski Renamed three "solid-compatible" receptors to have more informative names
(edit) @974   2 years Maciej Komosinski Renamed all genooper paramtab variables to be consistent with the …
(edit) @973   2 years Maciej Komosinski Increased SString and std::string compatibility: introduced length(), …
(edit) @972   2 years Maciej Komosinski - separate "0" and "0s" formats (for SHAPE_BALL_AND_STICK and …
(edit) @969   2 years Maciej Komosinski fS: preserved volume during shape-type changes
(edit) @968   2 years Maciej Komosinski Introduced a separate function to mutate neuron connection weight
(edit) @967   2 years Maciej Komosinski Improved names of functions that mutate neuron properties and improved docs
(edit) @966   2 years Maciej Komosinski Cosmetic
(edit) @965   2 years Maciej Komosinski Added a function to print genotypes in the LaTeX format, preserving …
(edit) @961   2 years Maciej Komosinski Cosmetic
(edit) @960   2 years Maciej Komosinski Simplified code and fixed a bug where all existing non-default …
(edit) @959   2 years Maciej Komosinski Added a high-level neuron mutation function
(edit) @958   2 years Maciej Komosinski Added the fS genetic encoding (for solids)
(edit) @957   2 years Maciej Komosinski Replace magic "100" with GenoOperators::NEUROCLASS_PROP_OFFSET
(edit) @955   2 years Maciej Komosinski Genetic format ID becomes a string (no longer limited to a single …
(edit) @954   2 years Maciej Komosinski Fixed genotype returned on conversion error
(edit) @952   2 years Maciej Komosinski Added new receptors (Gp:"gyroscope" on a Part, Tp:Touch-proximity and …
(edit) @938   2 years Maciej Komosinski Set "M" solid muscle neuron class active by default
(edit) @935   2 years Maciej Komosinski Utility functions that provide a set of all neuron classes fulfilling …
(edit) @899   3 years Maciej Komosinski Code formatting
(edit) @896   3 years Maciej Komosinski Replaced #defined macros for popular random-related operations with …
(edit) @857   4 years Maciej Komosinski Initialized variables in all cases to make potential errors evident
(edit) @853   4 years Maciej Komosinski The official C++17 fallthrough? attribute instead of comments no break
(edit) @841   4 years Maciej Komosinski Updated #includes after splitting stl-util into util-stl, util-file …
(edit) @835   4 years Maciej Komosinski ISO C++17 compliance including NULL, nullptr, templates and pointer …
(edit) @831   4 years Maciej Komosinski Fixed broken neuron creation (missing argument - regression from r760, …
(edit) @830   4 years Maciej Komosinski "%ld" replaced with "%d" because it refers to int
(edit) @829   4 years Maciej Komosinski Removed unnecessary cast, "long" is equivalent to "int" in our compilations
(edit) @821   4 years Maciej Komosinski Performance and stability improvements in fB, fH, and fL; improved …
(edit) @809   4 years Maciej Komosinski Fixed a signed/unsigned warning
(edit) @808   4 years Maciej Komosinski New option for mutation in numerical encoding fn: mutate all variables …
(edit) @804   4 years Maciej Komosinski Fixed memory leak and uninitialized int
(edit) @803   4 years Maciej Komosinski Performance improvements, including avoiding unnecessary passing of …
(edit) @802   4 years Maciej Komosinski Crossing over with less bloat, but still biologically-inspired
(edit) @801   4 years Maciej Komosinski Added a helper function that counts active neuron classes
(edit) @797   4 years Maciej Komosinski A more complete implementation of fB, fH, fL
(edit) @788   4 years Maciej Komosinski Fixed #include filename for f8 converter
(edit) @787   5 years Maciej Komosinski Removed a comment; sprintf() gives more control and precision than …
(edit) @783   5 years Maciej Komosinski Removed the unused "info" field and fixed a bug with incorrect …
(edit) @780   5 years Maciej Komosinski Added sources for genetic encodings fB, fH, fL
(edit) @779   5 years Maciej Komosinski Unified file names of all files involved in genetic conversions and …
(edit) @777   5 years Maciej Komosinski Fixed a typo
(edit) @776   5 years Maciej Komosinski Removed extra checkpoint
(edit) @774   5 years Maciej Komosinski Removed unused "state" field (issue number 19), improved docs (issues …
(edit) @773   5 years Maciej Komosinski Improved styling implementation, fixes issue number 18 [refs #62]
(edit) @772   5 years Maciej Komosinski Unified #define modifiers in f1 and f4, fixes issue number 16 [refs #62]
(edit) @771   5 years Maciej Komosinski Added color and size modifiers in f4; avoided unnecessary conditions …
(edit) @770   5 years Maciej Komosinski Avoided "min" and "max" as variable names, fixes issue 22 [refs #62]
(edit) @768   5 years Maciej Komosinski Reverted to 100x repeat-until-valid-mutation, required due to how …
(edit) @767   5 years Maciej Komosinski More strict parsing of the repetition counter; bug fixes; improved …
(edit) @765   5 years Maciej Komosinski Wider ranges of allowed values for mutation when only partial …
(edit) @764   5 years Maciej Komosinski Less deterministic (less absorbing) mutation for very narrow allowed …
(edit) @763   5 years Maciej Komosinski Higher precision when storing variable values
(edit) @762   5 years Maciej Komosinski Default sample values for a 2D problem, not 1D; added documentation …
(edit) @761   5 years Maciej Komosinski Introduced a macro for the number of times GenMan? tries to repeat a …
(edit) @760   5 years Maciej Komosinski - added support for new API for neuron types and their properties - …
(edit) @759   5 years Maciej Komosinski f1 and f4 stick properties unified and moved to a separate structure …
(edit) @758   5 years Maciej Komosinski Added a few useful functions providing lists of neurons with specific …
(edit) @757   5 years Maciej Komosinski Removed appending the original fn genotype as a comment in the …
(edit) @752   5 years Maciej Komosinski Mutation in the 'fn' encoding respects custom min,max,stddev for each …
(edit) @751   5 years Maciej Komosinski More versatile mutation function for numbers
(edit) @750   5 years Maciej Komosinski More proper definition of the crossover parameter
(edit) @749   5 years Maciej Komosinski Added a new function to linearly mix two vectors of real numbers
(edit) @748   5 years Maciej Komosinski Configured and activated the new "fn" genetic representation
(edit) @747   5 years Maciej Komosinski Added a new "fn" genetic representation (a vector of real numbers for …
(edit) @743   5 years Maciej Komosinski Introduced different function names in C++ instead of overloading …
(edit) @740   5 years Maciej Komosinski Added support for developmental phases ("checkpoints") to converters …
(edit) @736   5 years Maciej Komosinski Added the new "using_checkpoints" argument to genetic converters so …
(edit) @735   5 years Maciej Komosinski Base genotype converter is now abstract, which triggers compilation …
(edit) @732   5 years Maciej Komosinski Added support for "checkpoints" (intermediate phases of development of …
(edit) @726   5 years Maciej Komosinski - Changed Model::singleStepBuild() to Model::addFromString() to create …
(edit) @720   5 years Maciej Komosinski Param::save2() renamed to saveSingleLine(); unified Param::load() so …
(edit) @719   5 years Maciej Komosinski f1->f0 mapping maps ',' and ')' symbols to the branching Part (earlier …
(edit) @716   5 years Maciej Komosinski The f1 converter is now able to map more than one genotype character …
(edit) @715   5 years Maciej Komosinski GenMan?'s constructor now calls its setDefaults() to initialize all …
(edit) @714   5 years Maciej Komosinski - Setting default NeuroClass? active/genactive in preconfigured …
(edit) @676   5 years Maciej Komosinski Improved comments, removed unnecessary TODO regarding "Rr" modifiers
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