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@708
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7 years |
Maciej Komosinski |
Improved diagnostic message
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@707
|
7 years |
konrad |
Added a warning message about merging nodes with a virtual parent node.
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@706
|
7 years |
konrad |
No more svn ignore on mds-and-trees
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@705
|
7 years |
konrad |
Added an example of configuration file with colormaps
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@702
|
7 years |
konrad |
Non-normalized step values for cmap can now extend outside the range …
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@701
|
7 years |
konrad |
Fixed a bug that could occur for trees with a lot of crossover …
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@700
|
7 years |
konrad |
Colors support matplotlib cmaps now. 'color' property in config file …
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@697
|
7 years |
Maciej Komosinski |
More legible and consistent notation of ranges
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@696
|
7 years |
konrad |
Changes to formating of min/max values of properties
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@695
|
7 years |
konrad |
Using matplotlib's color package to interpret colors. Color can be now …
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@694
|
7 years |
konrad |
Some improvements in behavior for big trees
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@690
|
7 years |
konrad |
Better (but not ideal) behavior for very big trees
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@689
|
7 years |
Maciej Komosinski |
More informative message
|
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@688
|
7 years |
Maciej Komosinski |
More informative message
|
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@687
|
7 years |
konrad |
Using "inherited' to decide horizontal distance from the parent
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@686
|
7 years |
Maciej Komosinski |
Made loop iteration variable implicit ("enumerate")
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@685
|
7 years |
Maciej Komosinski |
Displays progress as convenient percentage
|
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@684
|
7 years |
Maciej Komosinski |
Minor optimization
|
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@683
|
7 years |
Maciej Komosinski |
Slightly more helpful error message
|
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@682
|
7 years |
konrad |
Broken last lines in input logs will not crash the script anymore (the …
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@681
|
7 years |
konrad |
Improved the compute_depth function so now it works much faster for …
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@680
|
7 years |
konrad |
Fixed the "ValueError?: max() arg is an empty sequence" error occurring …
|
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@679
|
7 years |
konrad |
compute_adepth no longer uses recursion (so it should work better …
|
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@678
|
7 years |
konrad |
Fixed a bug attempting to normalize a list of lists
|
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|
@677
|
7 years |
konrad |
Fixed a bug with an incorrect order of assigning placement to nodes
|
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@633
|
8 years |
konrad |
Added measure of progress (based on regression of time-distances …
|
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@628
|
8 years |
konrad |
Fixed printing texts in svg and added support for additional …
|
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@627
|
8 years |
konrad |
tree-genealogy.py is now supporting multiple virtual parents (they are …
|
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@626
|
8 years |
konrad |
Added multisampling (antialiasing) option for raster output
|
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@625
|
8 years |
konrad |
Font for tree-genealogy.py
|
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|
@624
|
8 years |
konrad |
New, faster, more flexible and refactored version of the …
|
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|
|
@623
|
8 years |
konrad |
Some minor changes
|
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|
@622
|
8 years |
konrad |
Added an option to restrict the tree to first X nodes.
|
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@621
|
8 years |
konrad |
Rewritten prepos_children to the iterative form + Turned on some debugging
|
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|
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@620
|
8 years |
konrad |
The parameters should not be case specific anymore, also added some …
|
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@619
|
8 years |
konrad |
Changed spine and skeleton drawing methods from recurrent to iterative …
|
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@618
|
8 years |
konrad |
Removed the recurrent version of the tree-drawing method, fixed and …
|
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@617
|
8 years |
konrad |
Added non-recurrent verion of tree drawing function, …
|
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|
|
@616
|
8 years |
Maciej Komosinski |
Introduced an option to swap (exchange) X and Y axes
|
|
|
|
@615
|
8 years |
Maciej Komosinski |
Improved descriptions
|
|
|
|
@614
|
8 years |
Maciej Komosinski |
Fixed typos
|
|
|
|
@613
|
8 years |
Maciej Komosinski |
Introduced options to flip (invert, negate) X and/or Y axes
|
|
|
|
@609
|
8 years |
Maciej Komosinski |
Labels can have colors dependent on label text
|
|
|
|
@608
|
8 years |
Maciej Komosinski |
Displays the fraction of variance preserved after MDS
|
|
|
|
@607
|
8 years |
Maciej Komosinski |
Updated for new format of dissimilarity matrix (with the optional two …
|
|
|
|
@604
|
8 years |
Maciej Komosinski |
Made the amount of jitter a continuous, adjustable parameter
|
|
|
|
@603
|
8 years |
oriona |
Integer command line arguments converted to ints in main call.
|
|
|
|
@602
|
8 years |
Maciej Komosinski |
- More flexible reading of distance matrices from files
- Can also …
|
|
|
|
@600
|
8 years |
oriona |
Number of returned dimensions set to minimum of desired number and the …
|
|
|
|
@599
|
8 years |
oriona |
Function for computing variances removed.
|
|
|
|
@598
|
8 years |
oriona |
MDS algorithm changed to cmdscale. Coordinates export to file added.
|
|
|
|
@597
|
8 years |
Maciej Komosinski |
No longer ignores "jitter" and "outname" parameters
|
|
|
|
@596
|
8 years |
Maciej Komosinski |
Uncomment to make it work with no graphical backend
|
|
|
|
@594
|
8 years |
konrad |
Fixed drawing the spine and the skeleton for the tree-genealogy.py
|
|
|
|
@589
|
8 years |
konrad |
Fixed dark lines inside lines in tree-genealogy.py
|
|
|
|
@586
|
8 years |
konrad |
Tiny refactoring of tree-genealogy.py
|
|
|
|
@585
|
8 years |
konrad |
Added an option for defining colors of crossover / mutation lines from …
|
|
|
|
@577
|
8 years |
konrad |
Supporting coloring edges and nodes by type, scalable dots
|
|
|
|
@576
|
8 years |
konrad |
Simple scale
|
|
|
|
@572
|
8 years |
konrad |
Added crossover and support for Inheritance table (but the table …
|
|
|
|
@571
|
8 years |
konrad |
Additional options in tree-genealogy.py, dots and jitter
|
|
|
|
@566
|
8 years |
konrad |
Added REAL time option for tree-genealogy.py, renamed previous REAL …
|
|
|
|
@565
|
8 years |
oriona |
Script for plotting results of the MDS added.
|
|
|
|
@564
|
8 years |
konrad |
some changes to drawing style + non-random dissimilarity + assertion
|
|
|
|
@563
|
8 years |
konrad |
updated to the new input format
|
|
|
|
@562
|
8 years |
Maciej Komosinski |
Added a script to draw genealogical trees based on parent-child …
|
