| 1 | /**
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| 2 | * conv_f4.h - f4 conversion functions.
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| 3 | *
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| 4 | * f4genotype - f4 format genotype conversions for FramSticks
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| 5 | *
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| 6 | * Copyright (C) 1999,2000 Adam Rotaru-Varga (adam_rotaru@yahoo.com)
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| 7 | * Copyright (C) 2001-2003 Maciej Komosinski
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| 8 | *
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| 9 | * This library is free software; you can redistribute it and/or
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| 10 | * modify it under the terms of the GNU Lesser General Public
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| 11 | * License as published by the Free Software Foundation; either
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| 12 | * version 2.1 of the License, or (at your option) any later version.
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| 13 | *
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| 14 | * This library is distributed in the hope that it will be useful,
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| 15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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| 17 | * Lesser General Public License for more details.
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| 18 | *
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| 19 | * You should have received a copy of the GNU Lesser General Public
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| 20 | * License along with this library; if not, write to the Free Software
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| 21 | * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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| 22 | *
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| 23 | */
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| 24 |
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| 25 | #ifndef _CONV_F4_H_
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| 26 | #define _CONV_F4_H_
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| 27 |
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| 28 | #include "model.h"
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| 29 | #include "modelparts.h"
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| 30 | #include "genoconv.h"
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| 31 | #include "f4_general.h"
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| 32 |
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| 33 |
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| 34 | // The f4->f0 converter
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| 35 | class GenoConv_F40: public GenoConverter
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| 36 | {
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| 37 | public:
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| 38 | GenoConv_F40();
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| 39 | SString convert(SString &in, MultiMap * map);
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| 40 | };
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| 41 |
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| 42 |
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| 43 | // a test-only f4->f1 converter, approximates only
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| 44 | class GenoConv_F41_TestOnly: public GenoConverter
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| 45 | {
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| 46 | public:
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| 47 | GenoConv_F41_TestOnly();
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| 48 | SString convert(SString &in, MultiMap * map);
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| 49 | };
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| 50 |
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| 51 |
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| 52 | // A Model descendant, which support build from an f4 genotype.
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| 53 | class f4_Model: public Model
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| 54 | {
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| 55 | public:
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| 56 | f4_Model();
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| 57 | ~f4_Model();
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| 58 | int buildFromF4(SString &geno);
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| 59 | void toF1Geno(SString &out); // output to f1 format, approximation
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| 60 | private:
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| 61 | f4_Cells * cells;
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| 62 | int buildModelRec(f4_Cell * ndad);
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| 63 | /**
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| 64 | * Get a cell which is a stick, by traversing dadlinks.
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| 65 | */
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| 66 | f4_Cell * getStick(f4_Cell * C);
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| 67 | int error;
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| 68 | int errorpos;
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| 69 | };
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| 70 |
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| 71 |
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| 72 | #endif
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| 73 |
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