#
# ChangeLog for mds-and-trees
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# Generated by Trac 1.2.1
# 11/26/24 08:40:45

Thu, 01 Sep 2016 15:01:37 GMT Maciej Komosinski [608]
	* mds-and-trees/mds_plot.py (modified)

	Displays the fraction of variance preserved after MDS


Thu, 01 Sep 2016 14:39:23 GMT Maciej Komosinski [607]
	* mds-and-trees/mds_plot.py (modified)

	Updated for new format of dissimilarity matrix (with the optional two ...


Tue, 30 Aug 2016 15:08:10 GMT Maciej Komosinski [604]
	* mds-and-trees/mds_plot.py (modified)

	Made the amount of jitter a continuous, adjustable parameter


Sun, 28 Aug 2016 16:34:15 GMT oriona [603]
	* mds-and-trees/mds_plot.py (modified)

	Integer command line arguments converted to ints in main call.


Sun, 28 Aug 2016 15:00:05 GMT Maciej Komosinski [602]
	* mds-and-trees/mds_plot.py (modified)

	- More flexible reading of distance matrices from files
	- Can also ...


Sun, 28 Aug 2016 13:04:25 GMT oriona [600]
	* mds-and-trees/mds_plot.py (modified)

	Number of returned dimensions set to minimum of desired number and ...


Thu, 25 Aug 2016 15:48:45 GMT oriona [599]
	* mds-and-trees/mds_plot.py (modified)

	Function for computing variances removed.


Thu, 25 Aug 2016 15:44:00 GMT oriona [598]
	* mds-and-trees/mds_plot.py (modified)

	MDS algorithm changed to cmdscale. Coordinates export to file added.


Wed, 24 Aug 2016 01:54:42 GMT Maciej Komosinski [597]
	* mds-and-trees/mds_plot.py (modified)

	No longer ignores "jitter" and "outname" parameters


Wed, 24 Aug 2016 01:52:38 GMT Maciej Komosinski [596]
	* mds-and-trees/mds_plot.py (modified)

	Uncomment to make it work with no graphical backend


Tue, 23 Aug 2016 16:13:31 GMT konrad [594]
	* mds-and-trees/tree-genealogy.py (modified)

	Fixed drawing the spine and the skeleton for the tree-genealogy.py


Fri, 19 Aug 2016 21:59:09 GMT konrad [589]
	* mds-and-trees/tree-genealogy.py (modified)

	Fixed dark lines inside lines in tree-genealogy.py


Thu, 18 Aug 2016 20:01:16 GMT konrad [586]
	* mds-and-trees/tree-genealogy.py (modified)

	Tiny refactoring of tree-genealogy.py


Thu, 18 Aug 2016 19:58:00 GMT konrad [585]
	* mds-and-trees/tree-genealogy.py (modified)

	Added an option for defining colors of crossover / mutation lines ...


Tue, 09 Aug 2016 17:38:35 GMT konrad [577]
	* mds-and-trees/tree-genealogy.py (modified)

	Supporting coloring edges and nodes by type, scalable dots


Tue, 09 Aug 2016 16:30:33 GMT konrad [576]
	* mds-and-trees/tree-genealogy.py (modified)

	Simple scale


Mon, 08 Aug 2016 18:13:29 GMT konrad [572]
	* mds-and-trees/tree-genealogy.py (modified)

	Added crossover and support for Inheritance table (but the table ...


Mon, 08 Aug 2016 14:10:18 GMT konrad [571]
	* mds-and-trees/tree-genealogy.py (modified)

	Additional options in tree-genealogy.py, dots and jitter


Sat, 06 Aug 2016 00:16:56 GMT konrad [566]
	* mds-and-trees/tree-genealogy.py (modified)

	Added REAL time option for tree-genealogy.py, renamed previous REAL ...


Fri, 05 Aug 2016 23:27:20 GMT oriona [565]
	* mds-and-trees/mds_plot.py (added)

	Script for plotting results of the MDS added.


Fri, 05 Aug 2016 21:25:02 GMT konrad [564]
	* mds-and-trees/tree-genealogy.py (modified)

	some changes to drawing style + non-random dissimilarity + assertion


Fri, 05 Aug 2016 21:15:07 GMT konrad [563]
	* mds-and-trees/tree-genealogy.py (modified)

	updated to the new input format


Fri, 05 Aug 2016 18:23:52 GMT Maciej Komosinski [562]
	* mds-and-trees (added)
	* mds-and-trees/tree-genealogy.py (added)

	Added a script to draw genealogical trees based on parent-child ...