# # ChangeLog for cpp/frams/genetics # # Generated by Trac 1.2.1 # 12/27/24 16:55:55 Mon, 28 Dec 2020 01:06:52 GMT Maciej Komosinski [1056] * cpp/README.txt (modified) * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.h (modified) * cpp/frams/model/geometry/geometryutils.cpp (modified) * cpp/frams/model/geometry/geometryutils.h (modified) * cpp/frams/model/geometry/part_distance_estimator.h (modified) Cosmetic Mon, 30 Nov 2020 02:44:14 GMT Maciej Komosinski [1039] * cpp/frams/config/f0-SDK.def (modified) * cpp/frams/config/f0.def (modified) * cpp/frams/genetics/f1/f1_conv.cpp (modified) * cpp/frams/genetics/f9/f9_conv.cpp (modified) * cpp/frams/genetics/geneprops.cpp (modified) * cpp/frams/genetics/geneprops.h (modified) * cpp/frams/model/defassign-f0-SDK.h (modified) * cpp/frams/model/f0-SDK-classes.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) Removed Part's "visual thickness" property Fri, 27 Nov 2020 19:54:50 GMT Maciej Komosinski [1032] * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_general.h (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) * cpp/frams/model/geometry/geometryutils.cpp (modified) * cpp/frams/model/geometry/geometryutils.h (modified) * cpp/frams/model/geometry/part_distance_estimator.h (moved) - fS: comma as an intuitive separator in genotype instead of weird ... Thu, 26 Nov 2020 00:30:40 GMT Maciej Komosinski [1030] * cpp/frams/genetics/fS/fS_conv.h (modified) * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_general.h (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.h (modified) * cpp/frams/genetics/fS/part_distance_estimator.h (modified) fS: refactoring Thu, 26 Nov 2020 00:27:42 GMT Maciej Komosinski [1029] * cpp/frams/genetics/fL/fL_oper.cpp (modified) fL: more legal characters allowed in syntax coloring Wed, 05 Aug 2020 12:24:31 GMT Maciej Komosinski [1023] * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) Added GenoOperators::calculateSolidVolume(Part) Mon, 20 Jul 2020 14:37:38 GMT Maciej Komosinski [1017] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/genetics/defgenoconv.cpp (modified) * cpp/frams/genetics/fS/fS_conv.cpp (modified) * cpp/frams/genetics/fS/fS_conv.h (modified) * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_general.h (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.h (modified) * cpp/frams/genetics/fS/part_distance_estimator.h (modified) fS: faster collision detection, depends on "geometry" algorithms Tue, 14 Jul 2020 14:04:46 GMT Maciej Komosinski [1006] * cpp/frams/genetics/fS/fS_conv.cpp (modified) * cpp/frams/genetics/fS/fS_conv.h (modified) * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_general.h (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.h (modified) * cpp/frams/genetics/fS/part_distance_estimator.h (added) Improved the fS encoding Tue, 14 Jul 2020 13:54:43 GMT Maciej Komosinski [1005] * cpp/common/Convert.cpp (modified) * cpp/common/Convert.h (modified) * cpp/common/random.h (modified) * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/genetics/f9/f9_oper.cpp (modified) * cpp/frams/param/paramobj.cpp (modified) * cpp/frams/util/extvalue.cpp (modified) Higher conformance with C++17, but gave up after missing M_PI, ... Mon, 13 Jul 2020 11:53:25 GMT Maciej Komosinski [1000] * cpp/frams/genetics/fS/fS_conv.h (modified) * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_general.h (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.h (modified) Improved the fS encoding Mon, 13 Jul 2020 11:51:43 GMT Maciej Komosinski [999] * cpp/frams/_demos/f0_variants_test.cpp (modified) * cpp/frams/_demos/full_props.cpp (modified) * cpp/frams/_demos/genoconv_test.cpp (modified) * cpp/frams/_demos/genomanipulation.cpp (modified) * cpp/frams/_demos/geometry/geometrytestutils.cpp (modified) * cpp/frams/_demos/multiline_f0_test.cpp (modified) * cpp/frams/_demos/neuro_layout_test.cpp (modified) * cpp/frams/_demos/neuro_test.cpp (modified) * cpp/frams/_demos/shapeconvert.cpp (modified) * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) * cpp/frams/model/geometry/modelgeoclass.cpp (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/model/modelobj.cpp (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/userinput/modelcheckpoints.cpp (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) More consistent usage of "shapetype" (vs. "shape") Thu, 09 Jul 2020 11:51:28 GMT Maciej Komosinski [994] * cpp/frams/_demos/genoconv_test.cpp (modified) * cpp/frams/_demos/genooper_test.cpp (modified) * cpp/frams/_demos/loader_test_param.cpp (modified) * cpp/frams/genetics/fF/fF_conv.cpp (modified) * tester/comparison.py (modified) * tester/tester.py (modified) Cosmetic Thu, 09 Jul 2020 09:37:46 GMT Maciej Komosinski [991] * cpp/frams/genetics/fF/fF_conv.cpp (modified) Updated target genetic format for fF (foraminifera) genetic encoding ... Wed, 08 Jul 2020 22:13:20 GMT Maciej Komosinski [988] * cpp/frams/genetics/genman.cpp (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/geno.h (modified) * cpp/frams/genetics/genoconv.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) Building a Model from Geno now fails when Model.shape is incompatible ... Wed, 08 Jul 2020 11:12:16 GMT Maciej Komosinski [981] * cpp/frams/genetics/genoconv.cpp (modified) Fixed misleading indentation Mon, 06 Jul 2020 21:39:36 GMT Maciej Komosinski [977] * cpp/frams/_demos/genomanipulation.cpp (modified) * cpp/frams/genetics/genman.cpp (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) Renamed functions for consistency; added an example of using ... Mon, 06 Jul 2020 21:36:46 GMT Maciej Komosinski [976] * cpp/frams/config/f0-SDK.def (modified) * cpp/frams/config/f0.def (modified) * cpp/frams/genetics/preconfigured.h (modified) * cpp/frams/neuro/neurocls-f0-SDK-factory.h (modified) * cpp/frams/neuro/neurocls-f0-SDK-library.h (modified) Renamed three "solid-compatible" receptors to have more informative names Mon, 06 Jul 2020 21:28:57 GMT Maciej Komosinski [974] * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/f9/f9_oper.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fF/fF_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fn/fn_oper.cpp (modified) Renamed all genooper paramtab variables to be consistent with the ... Thu, 02 Jul 2020 22:37:13 GMT Maciej Komosinski [973] * cpp/frams/_demos/genooper_test.cpp (modified) * cpp/frams/_demos/loader_test_geno.cpp (modified) * cpp/frams/_demos/paramtree_stdin_test.cpp (modified) * cpp/frams/_demos/printconvmap.cpp (modified) * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/canvas/neurodiagram.cpp (modified) * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f9/f9_conv.cpp (modified) * cpp/frams/genetics/fB/fB_conv.cpp (modified) * cpp/frams/genetics/fB/fB_general.h (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fF/fF_genotype.h (modified) * cpp/frams/genetics/fH/fH_general.cpp (modified) * cpp/frams/genetics/fL/fL_general.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/model/autoname.cpp (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/neuro/impl/neuroimpl-fuzzy-f0.cpp (modified) * cpp/frams/neuro/impl/neuroimpl-fuzzy.cpp (modified) * cpp/frams/neuro/neurofactory.cpp (modified) * cpp/frams/neuro/neurolibparam.cpp (modified) * cpp/frams/param/multiparamload.cpp (modified) * cpp/frams/param/mutableparam.cpp (modified) * cpp/frams/param/param.cpp (modified) * cpp/frams/util/extvalue.cpp (modified) * cpp/frams/util/sstring-simple.cpp (modified) * cpp/frams/util/sstring-simple.h (modified) * cpp/frams/util/sstring.cpp (modified) * cpp/frams/util/sstring.h (modified) * cpp/frams/util/sstringutils.cpp (modified) * cpp/frams/util/sstringutils.h (modified) * cpp/frams/vm/framscript.l (modified) * cpp/frams/vm/framscript.y (modified) Increased SString and std::string compatibility: introduced length(), ... Thu, 02 Jul 2020 22:32:23 GMT Maciej Komosinski [972] * cpp/frams/_demos/f0_variants_test.cpp (modified) * cpp/frams/_demos/full_props.cpp (modified) * cpp/frams/_demos/genoconv_test.cpp (modified) * cpp/frams/_demos/genomanipulation.cpp (modified) * cpp/frams/_demos/geometry/geometrytestutils.cpp (modified) * cpp/frams/_demos/multiline_f0_test.cpp (modified) * cpp/frams/_demos/neuro_layout_test.cpp (modified) * cpp/frams/_demos/neuro_test.cpp (modified) * cpp/frams/_demos/shapeconvert.cpp (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/geno.h (modified) * cpp/frams/genetics/genoconv.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/model/modelobj.cpp (modified) * cpp/frams/model/modelparts.h (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/userinput/modelcheckpoints.cpp (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) - separate "0" and "0s" formats (for SHAPE_BALL_AND_STICK and ... Mon, 29 Jun 2020 22:32:56 GMT Maciej Komosinski [969] * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_general.h (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.h (modified) fS: preserved volume during shape-type changes Mon, 29 Jun 2020 22:30:39 GMT Maciej Komosinski [968] * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) Introduced a separate function to mutate neuron connection weight Sun, 28 Jun 2020 21:33:17 GMT Maciej Komosinski [967] * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) Improved names of functions that mutate neuron properties and ... Sun, 28 Jun 2020 19:59:14 GMT Maciej Komosinski [966] * cpp/frams/genetics/fH/fH_general.cpp (modified) * cpp/frams/genetics/fH/fH_general.h (modified) * cpp/frams/genetics/genman.cpp (modified) Cosmetic Sat, 27 Jun 2020 21:14:01 GMT Maciej Komosinski [965] * cpp/frams/genetics/genman.cpp (modified) * cpp/frams/genetics/genman.h (modified) Added a function to print genotypes in the LaTeX format, preserving ... Thu, 25 Jun 2020 23:32:15 GMT Maciej Komosinski [961] * cpp/frams/genetics/fB/fB_oper.cpp (modified) * framspy/FramsticksCLI.py (modified) * framspy/FramsticksEvolution.py (modified) Cosmetic Thu, 25 Jun 2020 23:31:36 GMT Maciej Komosinski [960] * cpp/frams/genetics/fH/fH_oper.cpp (modified) Simplified code and fixed a bug where all existing non-default ... Thu, 25 Jun 2020 23:30:10 GMT Maciej Komosinski [959] * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) Added a high-level neuron mutation function Thu, 25 Jun 2020 14:36:23 GMT Maciej Komosinski [958] * cpp/CONTRIBUTORS.txt (modified) * cpp/frams/genetics/defgenoconv.cpp (modified) * cpp/frams/genetics/fS (added) * cpp/frams/genetics/fS/fS_conv.cpp (added) * cpp/frams/genetics/fS/fS_conv.h (added) * cpp/frams/genetics/fS/fS_general.cpp (added) * cpp/frams/genetics/fS/fS_general.h (added) * cpp/frams/genetics/fS/fS_oper.cpp (added) * cpp/frams/genetics/fS/fS_oper.h (added) * cpp/frams/genetics/gen-config-SDK.h (modified) Added the fS genetic encoding (for solids) Thu, 25 Jun 2020 14:31:25 GMT Maciej Komosinski [957] * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) Replace magic "100" with GenoOperators::NEUROCLASS_PROP_OFFSET Wed, 24 Jun 2020 22:34:29 GMT Maciej Komosinski [955] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/_demos/f0_variants_test.cpp (modified) * cpp/frams/_demos/genoconv_test.cpp (modified) * cpp/frams/_demos/genomanipulation.cpp (modified) * cpp/frams/_demos/genooper_test.cpp (modified) * cpp/frams/_demos/multiline_f0_test.cpp (modified) * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/genman.cpp (modified) * cpp/frams/genetics/genman.h (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/geno.h (modified) * cpp/frams/genetics/genoconv.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/util/sstring-simple.cpp (modified) * cpp/frams/util/sstring-simple.h (modified) * cpp/frams/util/sstring.cpp (modified) * cpp/frams/util/sstring.h (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) * cpp/frams/vm/classes/genoobj.h (modified) * cpp/frams/vm/framscript.l (modified) * cpp/frams/vm/framscript.y (modified) Genetic format ID becomes a string (no longer limited to a single ... Wed, 24 Jun 2020 22:29:34 GMT Maciej Komosinski [954] * cpp/frams/genetics/fB/fB_conv.cpp (modified) Fixed genotype returned on conversion error Fri, 19 Jun 2020 23:09:57 GMT Maciej Komosinski [952] * cpp/frams/config/f0-SDK.def (modified) * cpp/frams/config/f0.def (modified) * cpp/frams/genetics/preconfigured.h (modified) * cpp/frams/model/defassign-f0-SDK.h (modified) * cpp/frams/model/f0-SDK-classes.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) * cpp/frams/neuro/impl/neuroimpl-body-sdk.h (modified) * cpp/frams/neuro/neurocls-f0-SDK-factory.h (modified) * cpp/frams/neuro/neurocls-f0-SDK-library.h (modified) * cpp/frams/neuro/neuroimpl.cpp (modified) * cpp/frams/neuro/neuroimpl.h (modified) Added new receptors (Gp:"gyroscope" on a Part, Tp:Touch-proximity and ... Sat, 30 May 2020 18:27:31 GMT Maciej Komosinski [938] * cpp/frams/genetics/preconfigured.h (modified) Set "M" solid muscle neuron class active by default Fri, 29 May 2020 13:20:29 GMT Maciej Komosinski [935] * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) * cpp/frams/model/model.h (modified) * cpp/frams/neuro/neurofactory.cpp (modified) Utility functions that provide a set of all neuron classes fulfilling ... Sat, 30 Nov 2019 01:13:25 GMT Maciej Komosinski [899] * cpp/common/nonstd_math.h (modified) * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/f9/f9_oper.cpp (modified) * cpp/frams/genetics/fF/fF_oper.cpp (modified) * cpp/frams/genetics/fT/fTest_oper.cpp (modified) * cpp/frams/genetics/fn/fn_oper.cpp (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) Code formatting Sat, 30 Nov 2019 00:30:22 GMT Maciej Komosinski [896] * cpp/common/nonstd_math.cpp (modified) * cpp/common/nonstd_math.h (modified) * cpp/common/random.h (modified) * cpp/frams/_demos/genomanipulation.cpp (modified) * cpp/frams/canvas/nn_simple_layout.cpp (modified) * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/f9/f9_oper.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fF/fF_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fL/fL_matheval.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) * cpp/frams/genetics/fT/fTest_oper.cpp (modified) * cpp/frams/genetics/fn/fn_oper.cpp (modified) * cpp/frams/genetics/genman.cpp (modified) * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/neuro/impl/neuroimpl-simple.h (modified) * cpp/frams/neuro/neuroimpl.cpp (modified) * cpp/frams/util/rndutil.cpp (modified) Replaced #defined macros for popular random-related operations with ... Thu, 28 Mar 2019 21:14:19 GMT Maciej Komosinski [857] * cpp/frams/genetics/fL/fL_general.cpp (modified) Initialized variables in all cases to make potential errors evident Fri, 15 Feb 2019 02:09:31 GMT Maciej Komosinski [853] * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) The official C++17 [[fallthrough]] attribute instead of comments //no ... Sat, 08 Dec 2018 04:32:50 GMT Maciej Komosinski [841] * cpp/common/log.cpp (modified) * cpp/common/loggers/loggers.cpp (modified) * cpp/common/nonstd_stdio.cpp (modified) * cpp/common/virtfile/virtfile.cpp (modified) * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/genetics/fF/fF_genotype.h (modified) * cpp/frams/genetics/genman.cpp (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/genoconv.cpp (modified) Updated #includes after splitting stl-util into util-stl, util-file ... Wed, 05 Dec 2018 20:02:00 GMT Maciej Komosinski [835] * cpp/PrintFloat/Dragon4.h (modified) * cpp/common/nonstd_math.cpp (modified) * cpp/common/nonstd_math.h (modified) * cpp/frams/genetics/fH/fH_general.cpp (modified) ISO C++17 compliance including NULL, nullptr, templates and pointer ... Mon, 26 Nov 2018 00:25:48 GMT Maciej Komosinski [831] * cpp/frams/genetics/f4/f4_conv.cpp (modified) Fixed broken neuron creation (missing argument - regression from ... Sun, 25 Nov 2018 23:00:16 GMT Maciej Komosinski [830] * cpp/frams/genetics/f1/f1_conv.cpp (modified) * cpp/frams/genetics/f4/f4_conv.cpp (modified) * cpp/frams/genetics/f4/f4_general.cpp (modified) "%ld" replaced with "%d" because it refers to int Sun, 25 Nov 2018 22:47:54 GMT Maciej Komosinski [829] * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f4/f4_general.h (modified) Removed unnecessary cast, "long" is equivalent to "int" in our ... Tue, 09 Oct 2018 23:13:05 GMT Maciej Komosinski [821] * cpp/frams/genetics/fB/fB_conv.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fB/fB_oper.h (modified) * cpp/frams/genetics/fH/fH_general.cpp (modified) * cpp/frams/genetics/fH/fH_general.h (modified) * cpp/frams/genetics/fL/fL_general.cpp (modified) * cpp/frams/genetics/fL/fL_general.h (modified) * cpp/frams/genetics/fL/fL_matheval.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) Performance and stability improvements in fB, fH, and fL; improved ... Thu, 21 Jun 2018 00:43:43 GMT Maciej Komosinski [809] * cpp/frams/genetics/fn/fn_oper.cpp (modified) Fixed a signed/unsigned warning Thu, 21 Jun 2018 00:30:37 GMT Maciej Komosinski [808] * cpp/frams/genetics/fn/fn_oper.cpp (modified) * cpp/frams/genetics/fn/fn_oper.h (modified) New option for mutation in numerical encoding fn: mutate all ... Thu, 07 Jun 2018 15:43:19 GMT Maciej Komosinski [804] * cpp/frams/genetics/f4/f4_conv.cpp (modified) Fixed memory leak and uninitialized int Thu, 07 Jun 2018 15:42:49 GMT Maciej Komosinski [803] * cpp/frams/genetics/fH/fH_general.cpp (modified) * cpp/frams/genetics/fH/fH_general.h (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fL/fL_general.cpp (modified) * cpp/frams/genetics/fL/fL_general.h (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) Performance improvements, including avoiding unnecessary passing of ... Thu, 07 Jun 2018 15:41:59 GMT Maciej Komosinski [802] * cpp/frams/genetics/fB/fB_conv.cpp (modified) * cpp/frams/genetics/fB/fB_conv.h (modified) * cpp/frams/genetics/fB/fB_general.h (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) Crossing over with less bloat, but still biologically-inspired Thu, 07 Jun 2018 15:40:49 GMT Maciej Komosinski [801] * cpp/frams/genetics/genooperators.cpp (modified) * cpp/frams/genetics/genooperators.h (modified) Added a helper function that counts active neuron classes Tue, 05 Jun 2018 23:45:18 GMT Maciej Komosinski [797] * cpp/frams/genetics/fB/fB_conv.cpp (modified) * cpp/frams/genetics/fB/fB_conv.h (modified) * cpp/frams/genetics/fB/fB_general.h (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fB/fB_oper.h (modified) * cpp/frams/genetics/fH/fH_conv.cpp (modified) * cpp/frams/genetics/fH/fH_conv.h (modified) * cpp/frams/genetics/fH/fH_general.cpp (modified) * cpp/frams/genetics/fH/fH_general.h (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.h (modified) * cpp/frams/genetics/fL/fL_conv.cpp (modified) * cpp/frams/genetics/fL/fL_conv.h (modified) * cpp/frams/genetics/fL/fL_general.cpp (modified) * cpp/frams/genetics/fL/fL_general.h (modified) * cpp/frams/genetics/fL/fL_matheval.cpp (modified) * cpp/frams/genetics/fL/fL_matheval.h (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) * cpp/frams/genetics/fL/fL_oper.h (modified) A more complete implementation of fB, fH, fL Tue, 29 May 2018 12:32:44 GMT Maciej Komosinski [788] * cpp/frams/genetics/defgenoconv.cpp (modified) Fixed #include filename for f8 converter Wed, 23 May 2018 00:20:40 GMT Maciej Komosinski [787] * cpp/frams/genetics/fn/fn_conv.cpp (modified) Removed a comment; sprintf() gives more control and precision than ... Wed, 16 May 2018 19:20:31 GMT Maciej Komosinski [783] * cpp/frams/genetics/f4/f4_conv.cpp (modified) * cpp/frams/genetics/genoconv.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) Removed the unused "info" field and fixed a bug with incorrect ... Mon, 14 May 2018 15:53:10 GMT Maciej Komosinski [780] * cpp/README.txt (modified) * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/genetics/defgenoconv.cpp (modified) * cpp/frams/genetics/fB (added) * cpp/frams/genetics/fB/fB_conv.cpp (added) * cpp/frams/genetics/fB/fB_conv.h (added) * cpp/frams/genetics/fB/fB_general.h (added) * cpp/frams/genetics/fB/fB_oper.cpp (added) * cpp/frams/genetics/fB/fB_oper.h (added) * cpp/frams/genetics/fH (added) * cpp/frams/genetics/fH/fH_conv.cpp (added) * cpp/frams/genetics/fH/fH_conv.h (added) * cpp/frams/genetics/fH/fH_general.cpp (added) * cpp/frams/genetics/fH/fH_general.h (added) * cpp/frams/genetics/fH/fH_oper.cpp (added) * cpp/frams/genetics/fH/fH_oper.h (added) * cpp/frams/genetics/fL (added) * cpp/frams/genetics/fL/fL_conv.cpp (added) * cpp/frams/genetics/fL/fL_conv.h (added) * cpp/frams/genetics/fL/fL_general.cpp (added) * cpp/frams/genetics/fL/fL_general.h (added) * cpp/frams/genetics/fL/fL_matheval.cpp (added) * cpp/frams/genetics/fL/fL_matheval.h (added) * cpp/frams/genetics/fL/fL_oper.cpp (added) * cpp/frams/genetics/fL/fL_oper.h (added) * cpp/frams/genetics/gen-config-SDK.h (modified) * cpp/frams/genetics/genman.cpp (modified) Added sources for genetic encodings fB, fH, fL Fri, 11 May 2018 21:42:04 GMT Maciej Komosinski [779] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/_demos/genooper_test_fTest.cpp (modified) * cpp/frams/genetics/defgenoconv.cpp (modified) * cpp/frams/genetics/f1/f1_conv.cpp (moved) * cpp/frams/genetics/f1/f1_conv.h (moved) * cpp/frams/genetics/f4/f4_conv.cpp (moved) * cpp/frams/genetics/f4/f4_conv.h (moved) * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f4/f4_oper.cpp (moved) * cpp/frams/genetics/f4/f4_oper.h (moved) * cpp/frams/genetics/f9/f9_conv.cpp (moved) * cpp/frams/genetics/f9/f9_conv.h (moved) * cpp/frams/genetics/f9/f9_oper.cpp (moved) * cpp/frams/genetics/f9/f9_oper.h (moved) * cpp/frams/genetics/fF/fF_chamber3d.cpp (modified) * cpp/frams/genetics/fF/fF_chamber3d.h (modified) * cpp/frams/genetics/fF/fF_conv.cpp (moved) * cpp/frams/genetics/fF/fF_conv.h (moved) * cpp/frams/genetics/fF/fF_oper.cpp (moved) * cpp/frams/genetics/fF/fF_oper.h (moved) * cpp/frams/genetics/fT/fTest_oper.cpp (moved) * cpp/frams/genetics/fT/fTest_oper.h (moved) * cpp/frams/genetics/fn/fn_conv.cpp (moved) * cpp/frams/genetics/fn/fn_conv.h (moved) * cpp/frams/genetics/fn/fn_oper.cpp (moved) * cpp/frams/genetics/fn/fn_oper.h (moved) * cpp/frams/genetics/genman.cpp (modified) * cpp/frams/genetics/genman.h (modified) * cpp/frams/genetics/genooperators.cpp (moved) * cpp/frams/genetics/genooperators.h (moved) Unified file names of all files involved in genetic conversions and ... Thu, 10 May 2018 21:39:37 GMT Maciej Komosinski [777] * cpp/frams/genetics/f4/oper_f4.h (modified) Fixed a typo Thu, 10 May 2018 21:39:11 GMT Maciej Komosinski [776] * cpp/frams/genetics/f4/conv_f4.cpp (modified) Removed extra checkpoint Tue, 10 Apr 2018 23:16:08 GMT Maciej Komosinski [774] * cpp/frams/genetics/f4/conv_f4.cpp (modified) * cpp/frams/genetics/f4/conv_f4.h (modified) * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f4/f4_general.h (modified) * cpp/frams/genetics/f4/oper_f4.cpp (modified) * cpp/frams/genetics/f4/oper_f4.h (modified) Removed unused "state" field (issue number 19), improved docs (issues ... Thu, 05 Apr 2018 21:14:35 GMT Maciej Komosinski [773] * cpp/frams/genetics/f4/oper_f4.cpp (modified) Improved styling implementation, fixes issue number 18 [refs #62] Thu, 05 Apr 2018 18:03:20 GMT Maciej Komosinski [772] * cpp/frams/genetics/f4/oper_f4.cpp (modified) * cpp/frams/genetics/geneprops.h (modified) Unified #define modifiers in f1 and f4, fixes issue number 16 [refs #62] Thu, 05 Apr 2018 15:20:11 GMT Maciej Komosinski [771] * cpp/frams/genetics/f4/oper_f4.cpp (modified) Added color and size modifiers in f4; avoided unnecessary conditions ... Thu, 05 Apr 2018 15:16:03 GMT Maciej Komosinski [770] * cpp/frams/genetics/f4/f4_general.cpp (modified) Avoided "min" and "max" as variable names, fixes issue 22 [refs #62] Thu, 29 Mar 2018 23:12:24 GMT Maciej Komosinski [768] * cpp/frams/genetics/genman.cpp (modified) Reverted to 100x repeat-until-valid-mutation, required due to how ... Thu, 29 Mar 2018 20:52:36 GMT Maciej Komosinski [767] * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f4/f4_general.h (modified) * cpp/frams/genetics/f4/oper_f4.cpp (modified) More strict parsing of the repetition counter; bug fixes; improved ... Wed, 28 Mar 2018 00:33:11 GMT Maciej Komosinski [765] * cpp/frams/genetics/oper_fx.cpp (modified) Wider ranges of allowed values for mutation when only partial ... Wed, 28 Mar 2018 00:29:34 GMT Maciej Komosinski [764] * cpp/frams/genetics/oper_fx.cpp (modified) Less deterministic (less absorbing) mutation for very narrow allowed ... Wed, 28 Mar 2018 00:28:11 GMT Maciej Komosinski [763] * cpp/frams/genetics/fn/conv_fn.cpp (modified) Higher precision when storing variable values Wed, 28 Mar 2018 00:27:39 GMT Maciej Komosinski [762] * cpp/frams/genetics/fn/oper_fn.cpp (modified) * cpp/frams/genetics/fn/oper_fn.h (modified) Default sample values for a 2D problem, not 1D; added documentation ... Wed, 28 Mar 2018 00:26:29 GMT Maciej Komosinski [761] * cpp/frams/genetics/genman.cpp (modified) Introduced a macro for the number of times GenMan tries to repeat a ... Thu, 15 Mar 2018 21:55:05 GMT Maciej Komosinski [760] * cpp/frams/genetics/f4/conv_f4.cpp (modified) * cpp/frams/genetics/f4/conv_f4.h (modified) * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f4/f4_general.h (modified) * cpp/frams/genetics/f4/oper_f4.cpp (modified) * cpp/frams/genetics/f4/oper_f4.h (modified) - added support for new API for neuron types and their properties - ... Thu, 15 Mar 2018 21:53:35 GMT Maciej Komosinski [759] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/genetics/f1/conv_f1.cpp (modified) * cpp/frams/genetics/f1/conv_f1.h (modified) * cpp/frams/genetics/geneprops.cpp (added) * cpp/frams/genetics/geneprops.h (added) f1 and f4 stick properties unified and moved to a separate structure ... Thu, 15 Mar 2018 21:50:46 GMT Maciej Komosinski [758] * cpp/frams/genetics/oper_fx.cpp (modified) * cpp/frams/genetics/oper_fx.h (modified) Added a few useful functions providing lists of neurons with specific ... Wed, 14 Mar 2018 23:00:45 GMT Maciej Komosinski [757] * cpp/frams/genetics/fn/conv_fn.cpp (modified) Removed appending the original fn genotype as a comment in the ... Wed, 28 Feb 2018 22:43:57 GMT Maciej Komosinski [752] * cpp/frams/genetics/fn/conv_fn.cpp (modified) * cpp/frams/genetics/fn/oper_fn.cpp (modified) * cpp/frams/genetics/fn/oper_fn.h (modified) Mutation in the 'fn' encoding respects custom min,max,stddev for each ... Wed, 28 Feb 2018 22:41:58 GMT Maciej Komosinski [751] * cpp/frams/genetics/oper_fx.cpp (modified) * cpp/frams/genetics/oper_fx.h (modified) More versatile mutation function for numbers Wed, 28 Feb 2018 18:43:02 GMT Maciej Komosinski [750] * cpp/frams/genetics/fF/oper_fF.cpp (modified) More proper definition of the crossover parameter Wed, 28 Feb 2018 18:42:24 GMT Maciej Komosinski [749] * cpp/frams/genetics/oper_fx.cpp (modified) * cpp/frams/genetics/oper_fx.h (modified) Added a new function to linearly mix two vectors of real numbers Wed, 28 Feb 2018 18:41:33 GMT Maciej Komosinski [748] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/genetics/defgenoconv.cpp (modified) * cpp/frams/genetics/gen-config-SDK.h (modified) * cpp/frams/genetics/genman.cpp (modified) Configured and activated the new "fn" genetic representation Wed, 28 Feb 2018 18:39:41 GMT Maciej Komosinski [747] * cpp/frams/genetics/fn (added) * cpp/frams/genetics/fn/conv_fn.cpp (added) * cpp/frams/genetics/fn/conv_fn.h (added) * cpp/frams/genetics/fn/oper_fn.cpp (added) * cpp/frams/genetics/fn/oper_fn.h (added) Added a new "fn" genetic representation (a vector of real numbers for ... Mon, 26 Feb 2018 18:57:44 GMT Maciej Komosinski [743] * cpp/frams/genetics/f1/conv_f1.cpp (modified) * cpp/frams/genetics/oper_fx.cpp (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/param/param.cpp (modified) * cpp/frams/param/param.h (modified) Introduced different function names in C++ instead of overloading ... Tue, 20 Feb 2018 00:08:04 GMT Maciej Komosinski [740] * cpp/frams/genetics/f9/conv_f9.cpp (modified) * cpp/frams/genetics/fF/conv_fF.cpp (modified) Added support for developmental phases ("checkpoints") to converters ... Sat, 17 Feb 2018 18:02:07 GMT Maciej Komosinski [736] * cpp/frams/genetics/f4/conv_f4.cpp (modified) * cpp/frams/genetics/f4/conv_f4.h (modified) * cpp/frams/genetics/f9/conv_f9.cpp (modified) * cpp/frams/genetics/f9/conv_f9.h (modified) * cpp/frams/genetics/fF/conv_fF.cpp (modified) * cpp/frams/genetics/fF/conv_fF.h (modified) Added the new "using_checkpoints" argument to genetic converters so ... Sat, 17 Feb 2018 17:59:21 GMT Maciej Komosinski [735] * cpp/frams/genetics/genoconv.h (modified) Base genotype converter is now abstract, which triggers compilation ... Wed, 14 Feb 2018 23:42:07 GMT Maciej Komosinski [732] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/_demos/genoconv_test.cpp (modified) * cpp/frams/_demos/genotypeloader.cpp (modified) * cpp/frams/_demos/genotypeloader.h (modified) * cpp/frams/_demos/genotypemini.cpp (added) * cpp/frams/_demos/genotypemini.h (added) * cpp/frams/_demos/geometry/geometrytestutils.cpp (modified) * cpp/frams/_demos/loader_test_geno.cpp (modified) * cpp/frams/_demos/paramtree_paramlist_test.cpp (modified) * cpp/frams/_demos/printconvmap.cpp (modified) * cpp/frams/_demos/printconvmap.h (modified) * cpp/frams/_demos/saver_test_geno.cpp (modified) * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/config/f0-SDK.def (modified) * cpp/frams/config/f0.def (modified) * cpp/frams/config/sdk_build_config.h (modified) * cpp/frams/genetics/f1/conv_f1.cpp (modified) * cpp/frams/genetics/f1/conv_f1.h (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/geno.h (modified) * cpp/frams/genetics/genoconv.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) * cpp/frams/model/defassign-f0-SDK.h (modified) * cpp/frams/model/f0-SDK-classes.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/model/modelobj.cpp (modified) * cpp/frams/model/modelobj.h (modified) * cpp/frams/neuro/neuroimpl.cpp (modified) * cpp/frams/param/param.cpp (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) * cpp/frams/vm/classes/genoobj.h (modified) Added support for "checkpoints" (intermediate phases of development ... Fri, 19 Jan 2018 18:37:43 GMT Maciej Komosinski [726] * cpp/frams/genetics/f1/conv_f1.cpp (modified) * cpp/frams/genetics/f4/conv_f4.cpp (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) * cpp/frams/neuro/impl/neuroimpl-simple.cpp (modified) * cpp/frams/neuro/impl/neuroimpl-simple.h (modified) - Changed Model::singleStepBuild() to Model::addFromString() to ... Sun, 14 Jan 2018 10:24:22 GMT Maciej Komosinski [720] * cpp/common/virtfile/stringfile.h (modified) * cpp/frams/_demos/f0_variants_test.cpp (modified) * cpp/frams/genetics/fF/fF_genotype.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/neuro/neuroimpl.cpp (modified) * cpp/frams/param/multiparamload.cpp (modified) * cpp/frams/param/param.cpp (modified) * cpp/frams/param/param.h (modified) * cpp/frams/param/syntparam.cpp (modified) Param::save2() renamed to saveSingleLine(); unified Param::load() so ... Thu, 21 Dec 2017 20:48:17 GMT Maciej Komosinski [719] * cpp/frams/genetics/f1/conv_f1.cpp (modified) f1->f0 mapping maps ',' and ')' symbols to the branching Part ... Wed, 22 Nov 2017 01:50:49 GMT Maciej Komosinski [716] * cpp/frams/genetics/f1/conv_f1.cpp (modified) The f1 converter is now able to map more than one genotype character ... Sun, 05 Nov 2017 20:46:08 GMT Maciej Komosinski [715] * cpp/frams/genetics/genman.cpp (modified) GenMan's constructor now calls its setDefaults() to initialize all ... Sun, 05 Nov 2017 20:45:20 GMT Maciej Komosinski [714] * cpp/frams/genetics/preconfigured.h (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) * cpp/frams/neuro/geneticneuroparam.cpp (modified) * cpp/frams/neuro/geneticneuroparam.h (modified) - Setting default NeuroClass active/genactive in preconfigured ... Sat, 26 Aug 2017 01:05:37 GMT Maciej Komosinski [676] * cpp/frams/genetics/f4/oper_f4.cpp (modified) Improved comments, removed unnecessary TODO regarding "Rr" modifiers Sat, 19 Aug 2017 00:52:26 GMT Maciej Komosinski [675] * cpp/frams/genetics/f4/conv_f4.cpp (modified) * cpp/frams/genetics/oper_fx.h (modified) Code formatting Sat, 19 Aug 2017 00:45:00 GMT Maciej Komosinski [674] * cpp/frams/genetics/f4/oper_f4.cpp (modified) * cpp/frams/genetics/f4/oper_f4.h (modified) f4 modifiers implemented similarly to f1 modifiers, and a base for ... Sat, 19 Aug 2017 00:43:11 GMT Maciej Komosinski [673] * cpp/frams/genetics/oper_fx.cpp (modified) * cpp/frams/genetics/oper_fx.h (modified) Added three functions that may be useful in general Fri, 18 Aug 2017 20:08:42 GMT Maciej Komosinski [672] * cpp/frams/genetics/f1/conv_f1.cpp (modified) More appropriate name for the "model_energy_max" variable Fri, 18 Aug 2017 13:24:59 GMT Maciej Komosinski [671] * cpp/frams/genetics/f1/conv_f1.cpp (modified) * cpp/frams/genetics/f1/conv_f1.h (modified) * cpp/frams/genetics/f4/conv_f4.cpp (modified) * cpp/frams/genetics/f4/f4_general.cpp (modified) * cpp/frams/genetics/f4/f4_general.h (modified) * cpp/frams/genetics/f4/oper_f4.cpp (modified) * cpp/frams/genetics/f4/oper_f4.h (modified) Unified property names of f1 and f4; improved docs; 3.141 -> M_PI Fri, 11 Aug 2017 23:55:25 GMT Maciej Komosinski [670] * cpp/frams/genetics/oper_fx.cpp (modified) * cpp/frams/genetics/oper_fx.h (modified) Improved variable names and docs Fri, 11 Aug 2017 23:54:46 GMT Maciej Komosinski [669] * cpp/frams/genetics/fF/oper_fF.h (modified) As default foraminifera initial chamber radius in Framsticks units ...