#
# ChangeLog for cpp/frams/genetics
#
# Generated by Trac 1.2.1
# 03/23/25 01:51:14
Mon, 20 Jul 2020 14:37:38 GMT Maciej Komosinski [1017]
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/genetics/defgenoconv.cpp (modified)
* cpp/frams/genetics/fS/fS_conv.cpp (modified)
* cpp/frams/genetics/fS/fS_conv.h (modified)
* cpp/frams/genetics/fS/fS_general.cpp (modified)
* cpp/frams/genetics/fS/fS_general.h (modified)
* cpp/frams/genetics/fS/fS_oper.cpp (modified)
* cpp/frams/genetics/fS/fS_oper.h (modified)
* cpp/frams/genetics/fS/part_distance_estimator.h (modified)
fS: faster collision detection, depends on "geometry" algorithms
Tue, 14 Jul 2020 14:04:46 GMT Maciej Komosinski [1006]
* cpp/frams/genetics/fS/fS_conv.cpp (modified)
* cpp/frams/genetics/fS/fS_conv.h (modified)
* cpp/frams/genetics/fS/fS_general.cpp (modified)
* cpp/frams/genetics/fS/fS_general.h (modified)
* cpp/frams/genetics/fS/fS_oper.cpp (modified)
* cpp/frams/genetics/fS/fS_oper.h (modified)
* cpp/frams/genetics/fS/part_distance_estimator.h (added)
Improved the fS encoding
Tue, 14 Jul 2020 13:54:43 GMT Maciej Komosinski [1005]
* cpp/common/Convert.cpp (modified)
* cpp/common/Convert.h (modified)
* cpp/common/random.h (modified)
* cpp/frams/_demos/simil_test.cpp (modified)
* cpp/frams/genetics/f9/f9_oper.cpp (modified)
* cpp/frams/param/paramobj.cpp (modified)
* cpp/frams/util/extvalue.cpp (modified)
Higher conformance with C++17, but gave up after missing M_PI, ...
Mon, 13 Jul 2020 11:53:25 GMT Maciej Komosinski [1000]
* cpp/frams/genetics/fS/fS_conv.h (modified)
* cpp/frams/genetics/fS/fS_general.cpp (modified)
* cpp/frams/genetics/fS/fS_general.h (modified)
* cpp/frams/genetics/fS/fS_oper.cpp (modified)
* cpp/frams/genetics/fS/fS_oper.h (modified)
Improved the fS encoding
Mon, 13 Jul 2020 11:51:43 GMT Maciej Komosinski [999]
* cpp/frams/_demos/f0_variants_test.cpp (modified)
* cpp/frams/_demos/full_props.cpp (modified)
* cpp/frams/_demos/genoconv_test.cpp (modified)
* cpp/frams/_demos/genomanipulation.cpp (modified)
* cpp/frams/_demos/geometry/geometrytestutils.cpp (modified)
* cpp/frams/_demos/multiline_f0_test.cpp (modified)
* cpp/frams/_demos/neuro_layout_test.cpp (modified)
* cpp/frams/_demos/neuro_test.cpp (modified)
* cpp/frams/_demos/shapeconvert.cpp (modified)
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
* cpp/frams/genetics/geno.cpp (modified)
* cpp/frams/genetics/genoconv.h (modified)
* cpp/frams/model/geometry/modelgeoclass.cpp (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
* cpp/frams/model/modelobj.cpp (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/model/modelparts.h (modified)
* cpp/frams/model/similarity/simil_model.cpp (modified)
* cpp/frams/userinput/modelcheckpoints.cpp (modified)
* cpp/frams/vm/classes/genoobj.cpp (modified)
More consistent usage of "shapetype" (vs. "shape")
Thu, 09 Jul 2020 11:51:28 GMT Maciej Komosinski [994]
* cpp/frams/_demos/genoconv_test.cpp (modified)
* cpp/frams/_demos/genooper_test.cpp (modified)
* cpp/frams/_demos/loader_test_param.cpp (modified)
* cpp/frams/genetics/fF/fF_conv.cpp (modified)
* tester/comparison.py (modified)
* tester/tester.py (modified)
Cosmetic
Thu, 09 Jul 2020 09:37:46 GMT Maciej Komosinski [991]
* cpp/frams/genetics/fF/fF_conv.cpp (modified)
Updated target genetic format for fF (foraminifera) genetic encoding ...
Wed, 08 Jul 2020 22:13:20 GMT Maciej Komosinski [988]
* cpp/frams/genetics/genman.cpp (modified)
* cpp/frams/genetics/geno.cpp (modified)
* cpp/frams/genetics/geno.h (modified)
* cpp/frams/genetics/genoconv.cpp (modified)
* cpp/frams/genetics/genoconv.h (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/vm/classes/genoobj.cpp (modified)
Building a Model from Geno now fails when Model.shape is incompatible ...
Wed, 08 Jul 2020 11:12:16 GMT Maciej Komosinski [981]
* cpp/frams/genetics/genoconv.cpp (modified)
Fixed misleading indentation
Mon, 06 Jul 2020 21:39:36 GMT Maciej Komosinski [977]
* cpp/frams/_demos/genomanipulation.cpp (modified)
* cpp/frams/genetics/genman.cpp (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/model/modelparts.h (modified)
Renamed functions for consistency; added an example of using ...
Mon, 06 Jul 2020 21:36:46 GMT Maciej Komosinski [976]
* cpp/frams/config/f0-SDK.def (modified)
* cpp/frams/config/f0.def (modified)
* cpp/frams/genetics/preconfigured.h (modified)
* cpp/frams/neuro/neurocls-f0-SDK-factory.h (modified)
* cpp/frams/neuro/neurocls-f0-SDK-library.h (modified)
Renamed three "solid-compatible" receptors to have more informative
names
Mon, 06 Jul 2020 21:28:57 GMT Maciej Komosinski [974]
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/f9/f9_oper.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fF/fF_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
* cpp/frams/genetics/fS/fS_oper.cpp (modified)
* cpp/frams/genetics/fn/fn_oper.cpp (modified)
Renamed all genooper paramtab variables to be consistent with the ...
Thu, 02 Jul 2020 22:37:13 GMT Maciej Komosinski [973]
* cpp/frams/_demos/genooper_test.cpp (modified)
* cpp/frams/_demos/loader_test_geno.cpp (modified)
* cpp/frams/_demos/paramtree_stdin_test.cpp (modified)
* cpp/frams/_demos/printconvmap.cpp (modified)
* cpp/frams/_demos/simil_test.cpp (modified)
* cpp/frams/canvas/neurodiagram.cpp (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f9/f9_conv.cpp (modified)
* cpp/frams/genetics/fB/fB_conv.cpp (modified)
* cpp/frams/genetics/fB/fB_general.h (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fF/fF_genotype.h (modified)
* cpp/frams/genetics/fH/fH_general.cpp (modified)
* cpp/frams/genetics/fL/fL_general.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
* cpp/frams/genetics/fS/fS_general.cpp (modified)
* cpp/frams/model/autoname.cpp (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/neuro/impl/neuroimpl-fuzzy-f0.cpp (modified)
* cpp/frams/neuro/impl/neuroimpl-fuzzy.cpp (modified)
* cpp/frams/neuro/neurofactory.cpp (modified)
* cpp/frams/neuro/neurolibparam.cpp (modified)
* cpp/frams/param/multiparamload.cpp (modified)
* cpp/frams/param/mutableparam.cpp (modified)
* cpp/frams/param/param.cpp (modified)
* cpp/frams/util/extvalue.cpp (modified)
* cpp/frams/util/sstring-simple.cpp (modified)
* cpp/frams/util/sstring-simple.h (modified)
* cpp/frams/util/sstring.cpp (modified)
* cpp/frams/util/sstring.h (modified)
* cpp/frams/util/sstringutils.cpp (modified)
* cpp/frams/util/sstringutils.h (modified)
* cpp/frams/vm/framscript.l (modified)
* cpp/frams/vm/framscript.y (modified)
Increased SString and std::string compatibility: introduced length(), ...
Thu, 02 Jul 2020 22:32:23 GMT Maciej Komosinski [972]
* cpp/frams/_demos/f0_variants_test.cpp (modified)
* cpp/frams/_demos/full_props.cpp (modified)
* cpp/frams/_demos/genoconv_test.cpp (modified)
* cpp/frams/_demos/genomanipulation.cpp (modified)
* cpp/frams/_demos/geometry/geometrytestutils.cpp (modified)
* cpp/frams/_demos/multiline_f0_test.cpp (modified)
* cpp/frams/_demos/neuro_layout_test.cpp (modified)
* cpp/frams/_demos/neuro_test.cpp (modified)
* cpp/frams/_demos/shapeconvert.cpp (modified)
* cpp/frams/genetics/geno.cpp (modified)
* cpp/frams/genetics/geno.h (modified)
* cpp/frams/genetics/genoconv.cpp (modified)
* cpp/frams/genetics/genoconv.h (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
* cpp/frams/model/modelobj.cpp (modified)
* cpp/frams/model/modelparts.h (modified)
* cpp/frams/model/similarity/simil_model.cpp (modified)
* cpp/frams/userinput/modelcheckpoints.cpp (modified)
* cpp/frams/vm/classes/genoobj.cpp (modified)
- separate "0" and "0s" formats (for SHAPE_BALL_AND_STICK and ...
Mon, 29 Jun 2020 22:32:56 GMT Maciej Komosinski [969]
* cpp/frams/genetics/fS/fS_general.cpp (modified)
* cpp/frams/genetics/fS/fS_general.h (modified)
* cpp/frams/genetics/fS/fS_oper.cpp (modified)
* cpp/frams/genetics/fS/fS_oper.h (modified)
fS: preserved volume during shape-type changes
Mon, 29 Jun 2020 22:30:39 GMT Maciej Komosinski [968]
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
Introduced a separate function to mutate neuron connection weight
Sun, 28 Jun 2020 21:33:17 GMT Maciej Komosinski [967]
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/fS/fS_oper.cpp (modified)
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
Improved names of functions that mutate neuron properties and ...
Sun, 28 Jun 2020 19:59:14 GMT Maciej Komosinski [966]
* cpp/frams/genetics/fH/fH_general.cpp (modified)
* cpp/frams/genetics/fH/fH_general.h (modified)
* cpp/frams/genetics/genman.cpp (modified)
Cosmetic
Sat, 27 Jun 2020 21:14:01 GMT Maciej Komosinski [965]
* cpp/frams/genetics/genman.cpp (modified)
* cpp/frams/genetics/genman.h (modified)
Added a function to print genotypes in the LaTeX format, preserving ...
Thu, 25 Jun 2020 23:32:15 GMT Maciej Komosinski [961]
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* framspy/FramsticksCLI.py (modified)
* framspy/FramsticksEvolution.py (modified)
Cosmetic
Thu, 25 Jun 2020 23:31:36 GMT Maciej Komosinski [960]
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
Simplified code and fixed a bug where all existing non-default ...
Thu, 25 Jun 2020 23:30:10 GMT Maciej Komosinski [959]
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
Added a high-level neuron mutation function
Thu, 25 Jun 2020 14:36:23 GMT Maciej Komosinski [958]
* cpp/CONTRIBUTORS.txt (modified)
* cpp/frams/genetics/defgenoconv.cpp (modified)
* cpp/frams/genetics/fS (added)
* cpp/frams/genetics/fS/fS_conv.cpp (added)
* cpp/frams/genetics/fS/fS_conv.h (added)
* cpp/frams/genetics/fS/fS_general.cpp (added)
* cpp/frams/genetics/fS/fS_general.h (added)
* cpp/frams/genetics/fS/fS_oper.cpp (added)
* cpp/frams/genetics/fS/fS_oper.h (added)
* cpp/frams/genetics/gen-config-SDK.h (modified)
Added the fS genetic encoding (for solids)
Thu, 25 Jun 2020 14:31:25 GMT Maciej Komosinski [957]
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
Replace magic "100" with GenoOperators::NEUROCLASS_PROP_OFFSET
Wed, 24 Jun 2020 22:34:29 GMT Maciej Komosinski [955]
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/_demos/f0_variants_test.cpp (modified)
* cpp/frams/_demos/genoconv_test.cpp (modified)
* cpp/frams/_demos/genomanipulation.cpp (modified)
* cpp/frams/_demos/genooper_test.cpp (modified)
* cpp/frams/_demos/multiline_f0_test.cpp (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/genman.cpp (modified)
* cpp/frams/genetics/genman.h (modified)
* cpp/frams/genetics/geno.cpp (modified)
* cpp/frams/genetics/geno.h (modified)
* cpp/frams/genetics/genoconv.cpp (modified)
* cpp/frams/genetics/genoconv.h (modified)
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/util/sstring-simple.cpp (modified)
* cpp/frams/util/sstring-simple.h (modified)
* cpp/frams/util/sstring.cpp (modified)
* cpp/frams/util/sstring.h (modified)
* cpp/frams/vm/classes/genoobj.cpp (modified)
* cpp/frams/vm/classes/genoobj.h (modified)
* cpp/frams/vm/framscript.l (modified)
* cpp/frams/vm/framscript.y (modified)
Genetic format ID becomes a string (no longer limited to a single ...
Wed, 24 Jun 2020 22:29:34 GMT Maciej Komosinski [954]
* cpp/frams/genetics/fB/fB_conv.cpp (modified)
Fixed genotype returned on conversion error
Fri, 19 Jun 2020 23:09:57 GMT Maciej Komosinski [952]
* cpp/frams/config/f0-SDK.def (modified)
* cpp/frams/config/f0.def (modified)
* cpp/frams/genetics/preconfigured.h (modified)
* cpp/frams/model/defassign-f0-SDK.h (modified)
* cpp/frams/model/f0-SDK-classes.h (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/model/modelparts.h (modified)
* cpp/frams/neuro/impl/neuroimpl-body-sdk.h (modified)
* cpp/frams/neuro/neurocls-f0-SDK-factory.h (modified)
* cpp/frams/neuro/neurocls-f0-SDK-library.h (modified)
* cpp/frams/neuro/neuroimpl.cpp (modified)
* cpp/frams/neuro/neuroimpl.h (modified)
Added new receptors (Gp:"gyroscope" on a Part, Tp:Touch-proximity and ...
Sat, 30 May 2020 18:27:31 GMT Maciej Komosinski [938]
* cpp/frams/genetics/preconfigured.h (modified)
Set "M" solid muscle neuron class active by default
Fri, 29 May 2020 13:20:29 GMT Maciej Komosinski [935]
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
* cpp/frams/model/model.h (modified)
* cpp/frams/neuro/neurofactory.cpp (modified)
Utility functions that provide a set of all neuron classes fulfilling ...
Sat, 30 Nov 2019 01:13:25 GMT Maciej Komosinski [899]
* cpp/common/nonstd_math.h (modified)
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/f9/f9_oper.cpp (modified)
* cpp/frams/genetics/fF/fF_oper.cpp (modified)
* cpp/frams/genetics/fT/fTest_oper.cpp (modified)
* cpp/frams/genetics/fn/fn_oper.cpp (modified)
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/model/modelparts.h (modified)
Code formatting
Sat, 30 Nov 2019 00:30:22 GMT Maciej Komosinski [896]
* cpp/common/nonstd_math.cpp (modified)
* cpp/common/nonstd_math.h (modified)
* cpp/common/random.h (modified)
* cpp/frams/_demos/genomanipulation.cpp (modified)
* cpp/frams/canvas/nn_simple_layout.cpp (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_oper.cpp (modified)
* cpp/frams/genetics/f9/f9_oper.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fF/fF_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/fL/fL_matheval.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
* cpp/frams/genetics/fT/fTest_oper.cpp (modified)
* cpp/frams/genetics/fn/fn_oper.cpp (modified)
* cpp/frams/genetics/genman.cpp (modified)
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
* cpp/frams/neuro/impl/neuroimpl-simple.h (modified)
* cpp/frams/neuro/neuroimpl.cpp (modified)
* cpp/frams/util/rndutil.cpp (modified)
Replaced #defined macros for popular random-related operations with ...
Thu, 28 Mar 2019 21:14:19 GMT Maciej Komosinski [857]
* cpp/frams/genetics/fL/fL_general.cpp (modified)
Initialized variables in all cases to make potential errors evident
Fri, 15 Feb 2019 02:09:31 GMT Maciej Komosinski [853]
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
The official C++17 [[fallthrough]] attribute instead of comments //no ...
Sat, 08 Dec 2018 04:32:50 GMT Maciej Komosinski [841]
* cpp/common/log.cpp (modified)
* cpp/common/loggers/loggers.cpp (modified)
* cpp/common/nonstd_stdio.cpp (modified)
* cpp/common/virtfile/virtfile.cpp (modified)
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/genetics/fF/fF_genotype.h (modified)
* cpp/frams/genetics/genman.cpp (modified)
* cpp/frams/genetics/geno.cpp (modified)
* cpp/frams/genetics/genoconv.cpp (modified)
Updated #includes after splitting stl-util into util-stl, util-file ...
Wed, 05 Dec 2018 20:02:00 GMT Maciej Komosinski [835]
* cpp/PrintFloat/Dragon4.h (modified)
* cpp/common/nonstd_math.cpp (modified)
* cpp/common/nonstd_math.h (modified)
* cpp/frams/genetics/fH/fH_general.cpp (modified)
ISO C++17 compliance including NULL, nullptr, templates and pointer ...
Mon, 26 Nov 2018 00:25:48 GMT Maciej Komosinski [831]
* cpp/frams/genetics/f4/f4_conv.cpp (modified)
Fixed broken neuron creation (missing argument - regression from ...
Sun, 25 Nov 2018 23:00:16 GMT Maciej Komosinski [830]
* cpp/frams/genetics/f1/f1_conv.cpp (modified)
* cpp/frams/genetics/f4/f4_conv.cpp (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
"%ld" replaced with "%d" because it refers to int
Sun, 25 Nov 2018 22:47:54 GMT Maciej Komosinski [829]
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_general.h (modified)
Removed unnecessary cast, "long" is equivalent to "int" in our ...
Tue, 09 Oct 2018 23:13:05 GMT Maciej Komosinski [821]
* cpp/frams/genetics/fB/fB_conv.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.h (modified)
* cpp/frams/genetics/fH/fH_general.cpp (modified)
* cpp/frams/genetics/fH/fH_general.h (modified)
* cpp/frams/genetics/fL/fL_general.cpp (modified)
* cpp/frams/genetics/fL/fL_general.h (modified)
* cpp/frams/genetics/fL/fL_matheval.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
Performance and stability improvements in fB, fH, and fL; improved ...
Thu, 21 Jun 2018 00:43:43 GMT Maciej Komosinski [809]
* cpp/frams/genetics/fn/fn_oper.cpp (modified)
Fixed a signed/unsigned warning
Thu, 21 Jun 2018 00:30:37 GMT Maciej Komosinski [808]
* cpp/frams/genetics/fn/fn_oper.cpp (modified)
* cpp/frams/genetics/fn/fn_oper.h (modified)
New option for mutation in numerical encoding fn: mutate all ...
Thu, 07 Jun 2018 15:43:19 GMT Maciej Komosinski [804]
* cpp/frams/genetics/f4/f4_conv.cpp (modified)
Fixed memory leak and uninitialized int
Thu, 07 Jun 2018 15:42:49 GMT Maciej Komosinski [803]
* cpp/frams/genetics/fH/fH_general.cpp (modified)
* cpp/frams/genetics/fH/fH_general.h (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/fL/fL_general.cpp (modified)
* cpp/frams/genetics/fL/fL_general.h (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
Performance improvements, including avoiding unnecessary passing of ...
Thu, 07 Jun 2018 15:41:59 GMT Maciej Komosinski [802]
* cpp/frams/genetics/fB/fB_conv.cpp (modified)
* cpp/frams/genetics/fB/fB_conv.h (modified)
* cpp/frams/genetics/fB/fB_general.h (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
Crossing over with less bloat, but still biologically-inspired
Thu, 07 Jun 2018 15:40:49 GMT Maciej Komosinski [801]
* cpp/frams/genetics/genooperators.cpp (modified)
* cpp/frams/genetics/genooperators.h (modified)
Added a helper function that counts active neuron classes
Tue, 05 Jun 2018 23:45:18 GMT Maciej Komosinski [797]
* cpp/frams/genetics/fB/fB_conv.cpp (modified)
* cpp/frams/genetics/fB/fB_conv.h (modified)
* cpp/frams/genetics/fB/fB_general.h (modified)
* cpp/frams/genetics/fB/fB_oper.cpp (modified)
* cpp/frams/genetics/fB/fB_oper.h (modified)
* cpp/frams/genetics/fH/fH_conv.cpp (modified)
* cpp/frams/genetics/fH/fH_conv.h (modified)
* cpp/frams/genetics/fH/fH_general.cpp (modified)
* cpp/frams/genetics/fH/fH_general.h (modified)
* cpp/frams/genetics/fH/fH_oper.cpp (modified)
* cpp/frams/genetics/fH/fH_oper.h (modified)
* cpp/frams/genetics/fL/fL_conv.cpp (modified)
* cpp/frams/genetics/fL/fL_conv.h (modified)
* cpp/frams/genetics/fL/fL_general.cpp (modified)
* cpp/frams/genetics/fL/fL_general.h (modified)
* cpp/frams/genetics/fL/fL_matheval.cpp (modified)
* cpp/frams/genetics/fL/fL_matheval.h (modified)
* cpp/frams/genetics/fL/fL_oper.cpp (modified)
* cpp/frams/genetics/fL/fL_oper.h (modified)
A more complete implementation of fB, fH, fL
Tue, 29 May 2018 12:32:44 GMT Maciej Komosinski [788]
* cpp/frams/genetics/defgenoconv.cpp (modified)
Fixed #include filename for f8 converter
Wed, 23 May 2018 00:20:40 GMT Maciej Komosinski [787]
* cpp/frams/genetics/fn/fn_conv.cpp (modified)
Removed a comment; sprintf() gives more control and precision than ...
Wed, 16 May 2018 19:20:31 GMT Maciej Komosinski [783]
* cpp/frams/genetics/f4/f4_conv.cpp (modified)
* cpp/frams/genetics/genoconv.cpp (modified)
* cpp/frams/genetics/genoconv.h (modified)
Removed the unused "info" field and fixed a bug with incorrect ...
Mon, 14 May 2018 15:53:10 GMT Maciej Komosinski [780]
* cpp/README.txt (modified)
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/genetics/defgenoconv.cpp (modified)
* cpp/frams/genetics/fB (added)
* cpp/frams/genetics/fB/fB_conv.cpp (added)
* cpp/frams/genetics/fB/fB_conv.h (added)
* cpp/frams/genetics/fB/fB_general.h (added)
* cpp/frams/genetics/fB/fB_oper.cpp (added)
* cpp/frams/genetics/fB/fB_oper.h (added)
* cpp/frams/genetics/fH (added)
* cpp/frams/genetics/fH/fH_conv.cpp (added)
* cpp/frams/genetics/fH/fH_conv.h (added)
* cpp/frams/genetics/fH/fH_general.cpp (added)
* cpp/frams/genetics/fH/fH_general.h (added)
* cpp/frams/genetics/fH/fH_oper.cpp (added)
* cpp/frams/genetics/fH/fH_oper.h (added)
* cpp/frams/genetics/fL (added)
* cpp/frams/genetics/fL/fL_conv.cpp (added)
* cpp/frams/genetics/fL/fL_conv.h (added)
* cpp/frams/genetics/fL/fL_general.cpp (added)
* cpp/frams/genetics/fL/fL_general.h (added)
* cpp/frams/genetics/fL/fL_matheval.cpp (added)
* cpp/frams/genetics/fL/fL_matheval.h (added)
* cpp/frams/genetics/fL/fL_oper.cpp (added)
* cpp/frams/genetics/fL/fL_oper.h (added)
* cpp/frams/genetics/gen-config-SDK.h (modified)
* cpp/frams/genetics/genman.cpp (modified)
Added sources for genetic encodings fB, fH, fL
Fri, 11 May 2018 21:42:04 GMT Maciej Komosinski [779]
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/_demos/genooper_test_fTest.cpp (modified)
* cpp/frams/genetics/defgenoconv.cpp (modified)
* cpp/frams/genetics/f1/f1_conv.cpp (moved)
* cpp/frams/genetics/f1/f1_conv.h (moved)
* cpp/frams/genetics/f4/f4_conv.cpp (moved)
* cpp/frams/genetics/f4/f4_conv.h (moved)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_oper.cpp (moved)
* cpp/frams/genetics/f4/f4_oper.h (moved)
* cpp/frams/genetics/f9/f9_conv.cpp (moved)
* cpp/frams/genetics/f9/f9_conv.h (moved)
* cpp/frams/genetics/f9/f9_oper.cpp (moved)
* cpp/frams/genetics/f9/f9_oper.h (moved)
* cpp/frams/genetics/fF/fF_chamber3d.cpp (modified)
* cpp/frams/genetics/fF/fF_chamber3d.h (modified)
* cpp/frams/genetics/fF/fF_conv.cpp (moved)
* cpp/frams/genetics/fF/fF_conv.h (moved)
* cpp/frams/genetics/fF/fF_oper.cpp (moved)
* cpp/frams/genetics/fF/fF_oper.h (moved)
* cpp/frams/genetics/fT/fTest_oper.cpp (moved)
* cpp/frams/genetics/fT/fTest_oper.h (moved)
* cpp/frams/genetics/fn/fn_conv.cpp (moved)
* cpp/frams/genetics/fn/fn_conv.h (moved)
* cpp/frams/genetics/fn/fn_oper.cpp (moved)
* cpp/frams/genetics/fn/fn_oper.h (moved)
* cpp/frams/genetics/genman.cpp (modified)
* cpp/frams/genetics/genman.h (modified)
* cpp/frams/genetics/genooperators.cpp (moved)
* cpp/frams/genetics/genooperators.h (moved)
Unified file names of all files involved in genetic conversions and ...
Thu, 10 May 2018 21:39:37 GMT Maciej Komosinski [777]
* cpp/frams/genetics/f4/oper_f4.h (modified)
Fixed a typo
Thu, 10 May 2018 21:39:11 GMT Maciej Komosinski [776]
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
Removed extra checkpoint
Tue, 10 Apr 2018 23:16:08 GMT Maciej Komosinski [774]
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/genetics/f4/conv_f4.h (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_general.h (modified)
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
* cpp/frams/genetics/f4/oper_f4.h (modified)
Removed unused "state" field (issue number 19), improved docs (issues ...
Thu, 05 Apr 2018 21:14:35 GMT Maciej Komosinski [773]
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
Improved styling implementation, fixes issue number 18 [refs #62]
Thu, 05 Apr 2018 18:03:20 GMT Maciej Komosinski [772]
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
* cpp/frams/genetics/geneprops.h (modified)
Unified #define modifiers in f1 and f4, fixes issue number 16 [refs
#62]
Thu, 05 Apr 2018 15:20:11 GMT Maciej Komosinski [771]
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
Added color and size modifiers in f4; avoided unnecessary conditions ...
Thu, 05 Apr 2018 15:16:03 GMT Maciej Komosinski [770]
* cpp/frams/genetics/f4/f4_general.cpp (modified)
Avoided "min" and "max" as variable names, fixes issue 22 [refs #62]
Thu, 29 Mar 2018 23:12:24 GMT Maciej Komosinski [768]
* cpp/frams/genetics/genman.cpp (modified)
Reverted to 100x repeat-until-valid-mutation, required due to how ...
Thu, 29 Mar 2018 20:52:36 GMT Maciej Komosinski [767]
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_general.h (modified)
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
More strict parsing of the repetition counter; bug fixes; improved ...
Wed, 28 Mar 2018 00:33:11 GMT Maciej Komosinski [765]
* cpp/frams/genetics/oper_fx.cpp (modified)
Wider ranges of allowed values for mutation when only partial ...
Wed, 28 Mar 2018 00:29:34 GMT Maciej Komosinski [764]
* cpp/frams/genetics/oper_fx.cpp (modified)
Less deterministic (less absorbing) mutation for very narrow allowed ...
Wed, 28 Mar 2018 00:28:11 GMT Maciej Komosinski [763]
* cpp/frams/genetics/fn/conv_fn.cpp (modified)
Higher precision when storing variable values
Wed, 28 Mar 2018 00:27:39 GMT Maciej Komosinski [762]
* cpp/frams/genetics/fn/oper_fn.cpp (modified)
* cpp/frams/genetics/fn/oper_fn.h (modified)
Default sample values for a 2D problem, not 1D; added documentation ...
Wed, 28 Mar 2018 00:26:29 GMT Maciej Komosinski [761]
* cpp/frams/genetics/genman.cpp (modified)
Introduced a macro for the number of times GenMan tries to repeat a ...
Thu, 15 Mar 2018 21:55:05 GMT Maciej Komosinski [760]
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/genetics/f4/conv_f4.h (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_general.h (modified)
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
* cpp/frams/genetics/f4/oper_f4.h (modified)
- added support for new API for neuron types and their properties
- ...
Thu, 15 Mar 2018 21:53:35 GMT Maciej Komosinski [759]
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
* cpp/frams/genetics/f1/conv_f1.h (modified)
* cpp/frams/genetics/geneprops.cpp (added)
* cpp/frams/genetics/geneprops.h (added)
f1 and f4 stick properties unified and moved to a separate structure ...
Thu, 15 Mar 2018 21:50:46 GMT Maciej Komosinski [758]
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Added a few useful functions providing lists of neurons with specific ...
Wed, 14 Mar 2018 23:00:45 GMT Maciej Komosinski [757]
* cpp/frams/genetics/fn/conv_fn.cpp (modified)
Removed appending the original fn genotype as a comment in the ...
Wed, 28 Feb 2018 22:43:57 GMT Maciej Komosinski [752]
* cpp/frams/genetics/fn/conv_fn.cpp (modified)
* cpp/frams/genetics/fn/oper_fn.cpp (modified)
* cpp/frams/genetics/fn/oper_fn.h (modified)
Mutation in the 'fn' encoding respects custom min,max,stddev for each ...
Wed, 28 Feb 2018 22:41:58 GMT Maciej Komosinski [751]
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
More versatile mutation function for numbers
Wed, 28 Feb 2018 18:43:02 GMT Maciej Komosinski [750]
* cpp/frams/genetics/fF/oper_fF.cpp (modified)
More proper definition of the crossover parameter
Wed, 28 Feb 2018 18:42:24 GMT Maciej Komosinski [749]
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Added a new function to linearly mix two vectors of real numbers
Wed, 28 Feb 2018 18:41:33 GMT Maciej Komosinski [748]
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/genetics/defgenoconv.cpp (modified)
* cpp/frams/genetics/gen-config-SDK.h (modified)
* cpp/frams/genetics/genman.cpp (modified)
Configured and activated the new "fn" genetic representation
Wed, 28 Feb 2018 18:39:41 GMT Maciej Komosinski [747]
* cpp/frams/genetics/fn (added)
* cpp/frams/genetics/fn/conv_fn.cpp (added)
* cpp/frams/genetics/fn/conv_fn.h (added)
* cpp/frams/genetics/fn/oper_fn.cpp (added)
* cpp/frams/genetics/fn/oper_fn.h (added)
Added a new "fn" genetic representation (a vector of real numbers for ...
Mon, 26 Feb 2018 18:57:44 GMT Maciej Komosinski [743]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/param/param.cpp (modified)
* cpp/frams/param/param.h (modified)
Introduced different function names in C++ instead of overloading ...
Tue, 20 Feb 2018 00:08:04 GMT Maciej Komosinski [740]
* cpp/frams/genetics/f9/conv_f9.cpp (modified)
* cpp/frams/genetics/fF/conv_fF.cpp (modified)
Added support for developmental phases ("checkpoints") to converters ...
Sat, 17 Feb 2018 18:02:07 GMT Maciej Komosinski [736]
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/genetics/f4/conv_f4.h (modified)
* cpp/frams/genetics/f9/conv_f9.cpp (modified)
* cpp/frams/genetics/f9/conv_f9.h (modified)
* cpp/frams/genetics/fF/conv_fF.cpp (modified)
* cpp/frams/genetics/fF/conv_fF.h (modified)
Added the new "using_checkpoints" argument to genetic converters so ...
Sat, 17 Feb 2018 17:59:21 GMT Maciej Komosinski [735]
* cpp/frams/genetics/genoconv.h (modified)
Base genotype converter is now abstract, which triggers compilation ...
Wed, 14 Feb 2018 23:42:07 GMT Maciej Komosinski [732]
* cpp/frams/Makefile-SDK-files (modified)
* cpp/frams/_demos/genoconv_test.cpp (modified)
* cpp/frams/_demos/genotypeloader.cpp (modified)
* cpp/frams/_demos/genotypeloader.h (modified)
* cpp/frams/_demos/genotypemini.cpp (added)
* cpp/frams/_demos/genotypemini.h (added)
* cpp/frams/_demos/geometry/geometrytestutils.cpp (modified)
* cpp/frams/_demos/loader_test_geno.cpp (modified)
* cpp/frams/_demos/paramtree_paramlist_test.cpp (modified)
* cpp/frams/_demos/printconvmap.cpp (modified)
* cpp/frams/_demos/printconvmap.h (modified)
* cpp/frams/_demos/saver_test_geno.cpp (modified)
* cpp/frams/_demos/simil_test.cpp (modified)
* cpp/frams/config/f0-SDK.def (modified)
* cpp/frams/config/f0.def (modified)
* cpp/frams/config/sdk_build_config.h (modified)
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
* cpp/frams/genetics/f1/conv_f1.h (modified)
* cpp/frams/genetics/geno.cpp (modified)
* cpp/frams/genetics/geno.h (modified)
* cpp/frams/genetics/genoconv.cpp (modified)
* cpp/frams/genetics/genoconv.h (modified)
* cpp/frams/model/defassign-f0-SDK.h (modified)
* cpp/frams/model/f0-SDK-classes.h (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
* cpp/frams/model/modelobj.cpp (modified)
* cpp/frams/model/modelobj.h (modified)
* cpp/frams/neuro/neuroimpl.cpp (modified)
* cpp/frams/param/param.cpp (modified)
* cpp/frams/vm/classes/genoobj.cpp (modified)
* cpp/frams/vm/classes/genoobj.h (modified)
Added support for "checkpoints" (intermediate phases of development ...
Fri, 19 Jan 2018 18:37:43 GMT Maciej Komosinski [726]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/model/modelparts.h (modified)
* cpp/frams/neuro/impl/neuroimpl-simple.cpp (modified)
* cpp/frams/neuro/impl/neuroimpl-simple.h (modified)
- Changed Model::singleStepBuild() to Model::addFromString() to ...
Sun, 14 Jan 2018 10:24:22 GMT Maciej Komosinski [720]
* cpp/common/virtfile/stringfile.h (modified)
* cpp/frams/_demos/f0_variants_test.cpp (modified)
* cpp/frams/genetics/fF/fF_genotype.h (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/neuro/neuroimpl.cpp (modified)
* cpp/frams/param/multiparamload.cpp (modified)
* cpp/frams/param/param.cpp (modified)
* cpp/frams/param/param.h (modified)
* cpp/frams/param/syntparam.cpp (modified)
Param::save2() renamed to saveSingleLine(); unified Param::load() so ...
Thu, 21 Dec 2017 20:48:17 GMT Maciej Komosinski [719]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
f1->f0 mapping maps ',' and ')' symbols to the branching Part ...
Wed, 22 Nov 2017 01:50:49 GMT Maciej Komosinski [716]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
The f1 converter is now able to map more than one genotype character ...
Sun, 05 Nov 2017 20:46:08 GMT Maciej Komosinski [715]
* cpp/frams/genetics/genman.cpp (modified)
GenMan's constructor now calls its setDefaults() to initialize all ...
Sun, 05 Nov 2017 20:45:20 GMT Maciej Komosinski [714]
* cpp/frams/genetics/preconfigured.h (modified)
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/model/modelparts.h (modified)
* cpp/frams/neuro/geneticneuroparam.cpp (modified)
* cpp/frams/neuro/geneticneuroparam.h (modified)
- Setting default NeuroClass active/genactive in preconfigured ...
Sat, 26 Aug 2017 01:05:37 GMT Maciej Komosinski [676]
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
Improved comments, removed unnecessary TODO regarding "Rr" modifiers
Sat, 19 Aug 2017 00:52:26 GMT Maciej Komosinski [675]
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Code formatting
Sat, 19 Aug 2017 00:45:00 GMT Maciej Komosinski [674]
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
* cpp/frams/genetics/f4/oper_f4.h (modified)
f4 modifiers implemented similarly to f1 modifiers, and a base for ...
Sat, 19 Aug 2017 00:43:11 GMT Maciej Komosinski [673]
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Added three functions that may be useful in general
Fri, 18 Aug 2017 20:08:42 GMT Maciej Komosinski [672]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
More appropriate name for the "model_energy_max" variable
Fri, 18 Aug 2017 13:24:59 GMT Maciej Komosinski [671]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
* cpp/frams/genetics/f1/conv_f1.h (modified)
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_general.h (modified)
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
* cpp/frams/genetics/f4/oper_f4.h (modified)
Unified property names of f1 and f4; improved docs; 3.141 -> M_PI
Fri, 11 Aug 2017 23:55:25 GMT Maciej Komosinski [670]
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Improved variable names and docs
Fri, 11 Aug 2017 23:54:46 GMT Maciej Komosinski [669]
* cpp/frams/genetics/fF/oper_fF.h (modified)
As default foraminifera initial chamber radius in Framsticks units ...
Wed, 07 Jun 2017 10:02:05 GMT Maciej Komosinski [668]
* cpp/frams/genetics/genman.cpp (modified)
Fixed argument type in GenMan.getSimplest()
Wed, 07 Jun 2017 10:01:16 GMT Maciej Komosinski [667]
* cpp/frams/genetics/fF/conv_fF.cpp (modified)
* cpp/frams/genetics/fF/conv_fF.h (modified)
* cpp/frams/genetics/fF/fF_chamber3d.cpp (modified)
* cpp/frams/genetics/fF/fF_chamber3d.h (modified)
* cpp/frams/genetics/fF/fF_genotype.cpp (modified)
* cpp/frams/genetics/fF/fF_genotype.h (modified)
* cpp/frams/genetics/fF/oper_fF.cpp (modified)
* cpp/frams/genetics/fF/oper_fF.h (modified)
- fF foraminifera encoding supports scaling (radius) of the initial ...
Wed, 26 Apr 2017 17:22:20 GMT Maciej Komosinski [664]
* cpp/frams/genetics/f9/conv_f9.cpp (modified)
* cpp/frams/genetics/f9/conv_f9.h (modified)
Mark last Part white - a visual aid for easier editing of f9
genotypes
Sat, 31 Dec 2016 19:33:20 GMT Maciej Komosinski [643]
* cpp/frams/genetics/f9/conv_f9.cpp (modified)
The meaning of f9 3D-direction genes made consistent with Framsticks ...
Sat, 30 Jul 2016 01:19:31 GMT Maciej Komosinski [551]
* cpp/frams/genetics/preconfigured.h (modified)
PreconfiguredGenetics warns about unexpected use case and unregisters ...
Wed, 27 Jul 2016 23:09:29 GMT Maciej Komosinski [544]
* cpp/frams/_demos/geometry/geometrytestutils.cpp (modified)
* cpp/frams/_demos/part_shapes.cpp (modified)
* cpp/frams/_demos/shapeconvert.cpp (modified)
* cpp/frams/genetics/fF/conv_fF.cpp (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
* cpp/frams/model/modelparts.h (modified)
Renamed:
Model::getShape() ==> Model::getShapeType() ...