#
# ChangeLog for /
#
# Generated by Trac 1.2.1
# 03/14/25 07:29:15
Tue, 19 Sep 2017 00:35:09 GMT sz [699]
* java/Framclipse/com.framsticks.framclipse/res/framscript.xml (modified)
updated for the Framsticks release v5.0rc11 (mostly documentation ...
Mon, 18 Sep 2017 00:32:47 GMT Maciej Komosinski [698]
* cpp/frams/util/extvalue.cpp (modified)
Explicit cast to signed integer before applying negation, this is a ...
Tue, 05 Sep 2017 16:33:17 GMT Maciej Komosinski [697]
* mds-and-trees/tree-genealogy.py (modified)
More legible and consistent notation of ranges
Tue, 05 Sep 2017 14:14:41 GMT konrad [696]
* mds-and-trees/tree-genealogy.py (modified)
Changes to formating of min/max values of properties
Tue, 05 Sep 2017 14:08:58 GMT konrad [695]
* mds-and-trees/tree-genealogy.py (modified)
Using matplotlib's color package to interpret colors. Color can be ...
Mon, 04 Sep 2017 14:28:03 GMT konrad [694]
* mds-and-trees/tree-genealogy.py (modified)
Some improvements in behavior for big trees
Mon, 04 Sep 2017 02:03:15 GMT sz [693]
* java/Framclipse/com.framsticks.framclipse/res/framscript.xml (modified)
Updated for the most recent Framsticks release v5.0rc10
Mon, 04 Sep 2017 01:24:41 GMT Maciej Komosinski [692]
* cpp/frams/config/version.h (modified)
Updated version IDs
Mon, 04 Sep 2017 01:24:01 GMT Maciej Komosinski [691]
* cpp/common/Convert.h (modified)
* cpp/frams/util/sstringutils.cpp (modified)
* cpp/frams/util/sstringutils.h (modified)
Support for reading/parsing and writing 64-bit integer values
Mon, 04 Sep 2017 00:52:52 GMT konrad [690]
* mds-and-trees/tree-genealogy.py (modified)
Better (but not ideal) behavior for very big trees
Sun, 03 Sep 2017 16:22:55 GMT Maciej Komosinski [689]
* mds-and-trees/tree-genealogy.py (modified)
More informative message
Sun, 03 Sep 2017 16:21:10 GMT Maciej Komosinski [688]
* mds-and-trees/tree-genealogy.py (modified)
More informative message
Sun, 03 Sep 2017 15:37:43 GMT konrad [687]
* mds-and-trees/tree-genealogy.py (modified)
Using "inherited' to decide horizontal distance from the parent
Sun, 03 Sep 2017 14:23:17 GMT Maciej Komosinski [686]
* mds-and-trees/tree-genealogy.py (modified)
Made loop iteration variable implicit ("enumerate")
Sun, 03 Sep 2017 14:14:47 GMT Maciej Komosinski [685]
* mds-and-trees/tree-genealogy.py (modified)
Displays progress as convenient percentage
Sun, 03 Sep 2017 13:57:13 GMT Maciej Komosinski [684]
* mds-and-trees/tree-genealogy.py (modified)
Minor optimization
Sun, 03 Sep 2017 13:51:24 GMT Maciej Komosinski [683]
* mds-and-trees/tree-genealogy.py (modified)
Slightly more helpful error message
Sat, 02 Sep 2017 12:12:51 GMT konrad [682]
* mds-and-trees/tree-genealogy.py (modified)
Broken last lines in input logs will not crash the script anymore ...
Mon, 28 Aug 2017 16:43:30 GMT konrad [681]
* mds-and-trees/tree-genealogy.py (modified)
Improved the compute_depth function so now it works much faster for ...
Sun, 27 Aug 2017 18:05:45 GMT konrad [680]
* mds-and-trees/tree-genealogy.py (modified)
Fixed the "ValueError: max() arg is an empty sequence" error ...
Sun, 27 Aug 2017 17:48:02 GMT konrad [679]
* mds-and-trees/tree-genealogy.py (modified)
compute_adepth no longer uses recursion (so it should work better ...
Sun, 27 Aug 2017 13:11:36 GMT konrad [678]
* mds-and-trees/tree-genealogy.py (modified)
Fixed a bug attempting to normalize a list of lists
Sun, 27 Aug 2017 13:06:39 GMT konrad [677]
* mds-and-trees/tree-genealogy.py (modified)
Fixed a bug with an incorrect order of assigning placement to nodes
Sat, 26 Aug 2017 01:05:37 GMT Maciej Komosinski [676]
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
Improved comments, removed unnecessary TODO regarding "Rr" modifiers
Sat, 19 Aug 2017 00:52:26 GMT Maciej Komosinski [675]
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Code formatting
Sat, 19 Aug 2017 00:45:00 GMT Maciej Komosinski [674]
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
* cpp/frams/genetics/f4/oper_f4.h (modified)
f4 modifiers implemented similarly to f1 modifiers, and a base for ...
Sat, 19 Aug 2017 00:43:11 GMT Maciej Komosinski [673]
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Added three functions that may be useful in general
Fri, 18 Aug 2017 20:08:42 GMT Maciej Komosinski [672]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
More appropriate name for the "model_energy_max" variable
Fri, 18 Aug 2017 13:24:59 GMT Maciej Komosinski [671]
* cpp/frams/genetics/f1/conv_f1.cpp (modified)
* cpp/frams/genetics/f1/conv_f1.h (modified)
* cpp/frams/genetics/f4/conv_f4.cpp (modified)
* cpp/frams/genetics/f4/f4_general.cpp (modified)
* cpp/frams/genetics/f4/f4_general.h (modified)
* cpp/frams/genetics/f4/oper_f4.cpp (modified)
* cpp/frams/genetics/f4/oper_f4.h (modified)
Unified property names of f1 and f4; improved docs; 3.141 -> M_PI
Fri, 11 Aug 2017 23:55:25 GMT Maciej Komosinski [670]
* cpp/frams/genetics/oper_fx.cpp (modified)
* cpp/frams/genetics/oper_fx.h (modified)
Improved variable names and docs
Fri, 11 Aug 2017 23:54:46 GMT Maciej Komosinski [669]
* cpp/frams/genetics/fF/oper_fF.h (modified)
As default foraminifera initial chamber radius in Framsticks units ...
Wed, 07 Jun 2017 10:02:05 GMT Maciej Komosinski [668]
* cpp/frams/genetics/genman.cpp (modified)
Fixed argument type in GenMan.getSimplest()
Wed, 07 Jun 2017 10:01:16 GMT Maciej Komosinski [667]
* cpp/frams/genetics/fF/conv_fF.cpp (modified)
* cpp/frams/genetics/fF/conv_fF.h (modified)
* cpp/frams/genetics/fF/fF_chamber3d.cpp (modified)
* cpp/frams/genetics/fF/fF_chamber3d.h (modified)
* cpp/frams/genetics/fF/fF_genotype.cpp (modified)
* cpp/frams/genetics/fF/fF_genotype.h (modified)
* cpp/frams/genetics/fF/oper_fF.cpp (modified)
* cpp/frams/genetics/fF/oper_fF.h (modified)
- fF foraminifera encoding supports scaling (radius) of the initial ...
Wed, 07 Jun 2017 09:59:36 GMT Maciej Komosinski [666]
* cpp/frams/model/similarity/simil_model.cpp (modified)
Added missing #include
Wed, 07 Jun 2017 09:57:47 GMT Maciej Komosinski [665]
* cpp/common/nonstd_math.h (modified)
* cpp/common/threads.h (modified)
Cosmetic
Wed, 26 Apr 2017 17:22:20 GMT Maciej Komosinski [664]
* cpp/frams/genetics/f9/conv_f9.cpp (modified)
* cpp/frams/genetics/f9/conv_f9.h (modified)
Mark last Part white - a visual aid for easier editing of f9
genotypes
Tue, 25 Apr 2017 13:19:00 GMT sz [663]
* java/Framclipse/com.framsticks.framclipse/res/framscript.xml (modified)
Updated for the upcoming Framsticks v5.0rc9
Mon, 24 Apr 2017 16:19:34 GMT Maciej Komosinski [662]
* cpp/frams/_demos/geometry/geometrytestutils.cpp (modified)
- Ensure solid shapes (SolidsShapeTypeModel) are used in geometry ...
Mon, 24 Apr 2017 16:18:44 GMT Maciej Komosinski [661]
* cpp/frams/model/geometry/modelgeoclass.cpp (modified)
FramScript's ModelGeometr converts and caches the input model so ...
Mon, 24 Apr 2017 16:17:56 GMT Maciej Komosinski [660]
* cpp/frams/model/geometry/modelgeometryinfo.cpp (modified)
* cpp/frams/model/geometry/modelgeometryinfo.h (modified)
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
Model shape conversion no longer requires const Model&
Mon, 24 Apr 2017 16:15:49 GMT Maciej Komosinski [659]
* cpp/frams/param/param.cpp (modified)
Detecting more unwanted flags in Param sanity check
Mon, 24 Apr 2017 01:14:21 GMT Maciej Komosinski [658]
* cpp/frams/_demos/geometry/info_test.cpp (modified)
* cpp/frams/model/geometry/geometryutils.cpp (modified)
* cpp/frams/model/geometry/modelgeoclass.cpp (modified)
* cpp/frams/model/geometry/modelgeometryinfo.cpp (modified)
- One function name made shorter
- Fixed some typos
- Predictable ...
Mon, 24 Apr 2017 01:10:51 GMT Maciej Komosinski [657]
* cpp/frams/model/geometry/modelgeometryinfo.h (modified)
A comment on potential optimization in ModelGeometryInfo
Thu, 20 Apr 2017 19:10:27 GMT Maciej Komosinski [656]
* cpp/frams/config/f0.def (modified)
Removed useless READONLY flag in functions
Thu, 20 Apr 2017 19:09:18 GMT Maciej Komosinski [655]
* cpp/common/virtfile/virtfile.h (modified)
Better description of the VIRTFILE_OVERLOADING macro
Thu, 20 Apr 2017 19:08:19 GMT Maciej Komosinski [654]
* cpp/frams/param/param.cpp (modified)
More strict checking for improper flag/type combinations
Thu, 20 Apr 2017 19:06:47 GMT Maciej Komosinski [653]
* cpp/frams/model/model.cpp (modified)
Model::buildUsingSolidShapeTypes() can now handle single-Part models ...
Thu, 02 Feb 2017 14:15:26 GMT Maciej Komosinski [652]
* cpp/frams/vm/framscript.y (modified)
Cosmetic
Thu, 02 Feb 2017 14:14:49 GMT Maciej Komosinski [651]
* cpp/frams/util/validitychecks.cpp (modified)
0,1 -> false,true
Thu, 02 Feb 2017 14:14:19 GMT Maciej Komosinski [650]
* cpp/frams/param/param.cpp (modified)
* cpp/frams/param/param.h (modified)
Warn when missing closing tilde (~) and code formatting
Thu, 02 Feb 2017 14:13:39 GMT Maciej Komosinski [649]
* cpp/common/threads.h (modified)
Display diagnostic message when threads not released properly
Thu, 02 Feb 2017 14:12:54 GMT Maciej Komosinski [648]
* cpp/frams/vm/classes/collectionobj.cpp (modified)
Warn when trying to remove non-existing indexed object
Thu, 12 Jan 2017 15:30:41 GMT Maciej Komosinski [647]
* cpp/frams/model/similarity/simil_model.cpp (modified)
Updated URLs, removed non-ascii characters
Sat, 31 Dec 2016 19:36:13 GMT Maciej Komosinski [646]
* cpp/frams/neuro/neuroimpl.h (modified)
Support for multiple coexisting implementations of the same neuron ...
Sat, 31 Dec 2016 19:35:12 GMT Maciej Komosinski [645]
* cpp/frams/param/param.cpp (modified)
* cpp/frams/param/param.h (modified)
f0 is strict now, will not accept float when int is expected
Sat, 31 Dec 2016 19:34:10 GMT Maciej Komosinski [644]
* cpp/frams/model/model.cpp (modified)
Invalid references from neurons to Parts/Joints are now reported
Sat, 31 Dec 2016 19:33:20 GMT Maciej Komosinski [643]
* cpp/frams/genetics/f9/conv_f9.cpp (modified)
The meaning of f9 3D-direction genes made consistent with Framsticks ...
Sat, 31 Dec 2016 19:32:03 GMT Maciej Komosinski [642]
* cpp/frams/vm/classes/collectionobj.cpp (modified)
* cpp/frams/vm/classes/collectionobj.h (modified)
Implemented insert() in FramScript Vector class
Mon, 05 Dec 2016 02:34:28 GMT sz [641]
* java/Framclipse/com.framsticks.framclipse/res/framscript.xml (modified)
Updated for Framsticks version 5.0rc8
Mon, 05 Dec 2016 01:31:34 GMT Maciej Komosinski [640]
* cpp/frams/model/modelparts.cpp (modified)
* cpp/frams/param/param.cpp (modified)
* cpp/frams/param/param.h (modified)
Introduced a separate function to provide a human-friendly ...
Mon, 05 Dec 2016 01:29:50 GMT Maciej Komosinski [639]
* cpp/frams/_demos/genotypeloader.cpp (modified)
* cpp/frams/util/extvalue.cpp (modified)
* cpp/frams/util/extvalue.h (modified)
Introduced separate functions for formatting time.
Sat, 03 Dec 2016 02:16:38 GMT sz [638]
* experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified)
script updated (moveAbs, size_, pos_, center_)
Sat, 03 Dec 2016 01:21:40 GMT Maciej Komosinski [637]
* cpp/frams/model/modelparts.cpp (modified)
Extended code so that NeuroClass properties are described in more
detail
Sat, 03 Dec 2016 00:52:05 GMT Maciej Komosinski [636]
* cpp/frams/util/extvalue.cpp (modified)
* cpp/frams/util/extvalue.h (modified)
Modulo by zero is safe just as division by zero and prints analogous ...
Sat, 03 Dec 2016 00:47:15 GMT Maciej Komosinski [635]
* cpp/frams/_demos/genotypeloader.cpp (modified)
* cpp/frams/_demos/genotypeloader.h (modified)
Introduced specialized info_* fields in (Mini)Genotype that match FEC ...
Fri, 25 Nov 2016 15:45:57 GMT sz [634]
* experiments/frams/capture-the-flag/data/scripts/capture-the-flag.expdef (modified)
* experiments/frams/deathmatch/data/scripts/deathmatch.expdef (modified)
Updated for the upcoming Framsticks release - the old Shapes object ...
Wed, 23 Nov 2016 16:58:33 GMT konrad [633]
* mds-and-trees/tree-genealogy.py (modified)
Added measure of progress (based on regression of time-distances ...
Wed, 09 Nov 2016 03:35:36 GMT sz [632]
* experiments/frams/capture-the-flag/data/scripts/capture-the-flag.expdef (modified)
Updated to avoid using deprecated API (Creature.moveAbs, size_x/y/z, ...
Wed, 09 Nov 2016 03:29:53 GMT sz [631]
* experiments/frams/deathmatch/data/scripts/deathmatch-utils.inc (modified)
* experiments/frams/deathmatch/data/scripts/deathmatch.expdef (modified)
Updated the script to use more modern framscript features, most ...
Tue, 08 Nov 2016 22:53:51 GMT sz [630]
* blender-povray-animation/frams-pov-import.py (modified)
added the option to write a separate "camerapath.inc" instead of ...
Tue, 08 Nov 2016 22:49:22 GMT sz [629]
* blender-povray-animation/frams-pov-import.py (modified)
scientific notation numbers ('e') are floating point, even without a
dot
Thu, 27 Oct 2016 14:38:57 GMT konrad [628]
* mds-and-trees/tree-genealogy.py (modified)
Fixed printing texts in svg and added support for additional ...
Wed, 26 Oct 2016 17:13:26 GMT konrad [627]
* mds-and-trees/tree-genealogy.py (modified)
tree-genealogy.py is now supporting multiple virtual parents (they ...
Mon, 24 Oct 2016 13:01:12 GMT konrad [626]
* mds-and-trees/tree-genealogy.py (modified)
Added multisampling (antialiasing) option for raster output
Fri, 21 Oct 2016 21:40:42 GMT konrad [625]
* mds-and-trees/Vera.ttf (added)
Font for tree-genealogy.py
Fri, 21 Oct 2016 17:45:07 GMT konrad [624]
* mds-and-trees/tree-genealogy.py (modified)
* mds-and-trees/tree.conf (added)
New, faster, more flexible and refactored version of the tree- ...
Tue, 11 Oct 2016 15:19:04 GMT konrad [623]
* mds-and-trees/tree-genealogy.py (modified)
Some minor changes
Tue, 11 Oct 2016 14:48:23 GMT konrad [622]
* mds-and-trees/tree-genealogy.py (modified)
Added an option to restrict the tree to first X nodes.
Mon, 10 Oct 2016 15:18:52 GMT konrad [621]
* mds-and-trees/tree-genealogy.py (modified)
Rewritten prepos_children to the iterative form + Turned on some ...
Fri, 30 Sep 2016 00:43:38 GMT konrad [620]
* mds-and-trees/tree-genealogy.py (modified)
The parameters should not be case specific anymore, also added some ...
Fri, 23 Sep 2016 13:06:58 GMT konrad [619]
* mds-and-trees/tree-genealogy.py (modified)
Changed spine and skeleton drawing methods from recurrent to ...
Fri, 23 Sep 2016 11:09:55 GMT konrad [618]
* mds-and-trees/tree-genealogy.py (modified)
Removed the recurrent version of the tree-drawing method, fixed and ...
Wed, 21 Sep 2016 15:52:27 GMT konrad [617]
* mds-and-trees/tree-genealogy.py (modified)
Added non-recurrent verion of tree drawing function, ...
Wed, 14 Sep 2016 22:07:27 GMT Maciej Komosinski [616]
* mds-and-trees/mds_plot.py (modified)
Introduced an option to swap (exchange) X and Y axes
Sun, 11 Sep 2016 20:52:34 GMT Maciej Komosinski [615]
* mds-and-trees/tree-genealogy.py (modified)
Improved descriptions
Sun, 11 Sep 2016 20:45:46 GMT Maciej Komosinski [614]
* mds-and-trees/tree-genealogy.py (modified)
Fixed typos
Sun, 11 Sep 2016 01:59:38 GMT Maciej Komosinski [613]
* mds-and-trees/mds_plot.py (modified)
Introduced options to flip (invert, negate) X and/or Y axes
Fri, 09 Sep 2016 13:22:11 GMT Maciej Komosinski [612]
* cpp/frams/_demos/simil_test.cpp (modified)
Updated after field rename
Fri, 09 Sep 2016 13:21:47 GMT Maciej Komosinski [611]
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
Code formatting
Mon, 05 Sep 2016 01:39:14 GMT Maciej Komosinski [610]
* cpp/frams/model/model.cpp (modified)
* cpp/frams/model/model.h (modified)
- Introduced levels of checking the validity of a Model
- If a Joint ...
Thu, 01 Sep 2016 22:06:41 GMT Maciej Komosinski [609]
* mds-and-trees/mds_plot.py (modified)
Labels can have colors dependent on label text
Thu, 01 Sep 2016 15:01:37 GMT Maciej Komosinski [608]
* mds-and-trees/mds_plot.py (modified)
Displays the fraction of variance preserved after MDS
Thu, 01 Sep 2016 14:39:23 GMT Maciej Komosinski [607]
* mds-and-trees/mds_plot.py (modified)
Updated for new format of dissimilarity matrix (with the optional two ...
Tue, 30 Aug 2016 15:42:29 GMT Maciej Komosinski [606]
* cpp/frams/_demos/simil_test.cpp (modified)
* cpp/frams/model/similarity/simil_model.cpp (modified)
* cpp/frams/model/similarity/simil_model.h (modified)
Code formatting
Tue, 30 Aug 2016 15:39:10 GMT Maciej Komosinski [605]
* cpp/frams/_demos/simil_test.cpp (modified)
* cpp/frams/model/similarity/simil_model.cpp (modified)
* cpp/frams/model/similarity/simil_model.h (modified)
- Added 'fixedZaxis' option to paramtab (so that it is accessible ...
Tue, 30 Aug 2016 15:08:10 GMT Maciej Komosinski [604]
* mds-and-trees/mds_plot.py (modified)
Made the amount of jitter a continuous, adjustable parameter
Sun, 28 Aug 2016 16:34:15 GMT oriona [603]
* mds-and-trees/mds_plot.py (modified)
Integer command line arguments converted to ints in main call.
Sun, 28 Aug 2016 15:00:05 GMT Maciej Komosinski [602]
* mds-and-trees/mds_plot.py (modified)
- More flexible reading of distance matrices from files
- Can also ...
Sun, 28 Aug 2016 13:19:57 GMT oriona [601]
* cpp/frams/_demos/simil_test.cpp (modified)
* cpp/frams/model/similarity/simil_model.cpp (modified)
* cpp/frams/model/similarity/simil_model.h (modified)
Possibility of fixing z axis during the alignment added.
Sun, 28 Aug 2016 13:04:25 GMT oriona [600]
* mds-and-trees/mds_plot.py (modified)
Number of returned dimensions set to minimum of desired number and ...