# # ChangeLog for / # # Generated by Trac 1.2.1 # 11/23/24 14:34:32 Thu, 02 Feb 2017 14:14:19 GMT Maciej Komosinski [650] * cpp/frams/param/param.cpp (modified) * cpp/frams/param/param.h (modified) Warn when missing closing tilde (~) and code formatting Thu, 02 Feb 2017 14:13:39 GMT Maciej Komosinski [649] * cpp/common/threads.h (modified) Display diagnostic message when threads not released properly Thu, 02 Feb 2017 14:12:54 GMT Maciej Komosinski [648] * cpp/frams/vm/classes/collectionobj.cpp (modified) Warn when trying to remove non-existing indexed object Thu, 12 Jan 2017 15:30:41 GMT Maciej Komosinski [647] * cpp/frams/model/similarity/simil_model.cpp (modified) Updated URLs, removed non-ascii characters Sat, 31 Dec 2016 19:36:13 GMT Maciej Komosinski [646] * cpp/frams/neuro/neuroimpl.h (modified) Support for multiple coexisting implementations of the same neuron ... Sat, 31 Dec 2016 19:35:12 GMT Maciej Komosinski [645] * cpp/frams/param/param.cpp (modified) * cpp/frams/param/param.h (modified) f0 is strict now, will not accept float when int is expected Sat, 31 Dec 2016 19:34:10 GMT Maciej Komosinski [644] * cpp/frams/model/model.cpp (modified) Invalid references from neurons to Parts/Joints are now reported Sat, 31 Dec 2016 19:33:20 GMT Maciej Komosinski [643] * cpp/frams/genetics/f9/conv_f9.cpp (modified) The meaning of f9 3D-direction genes made consistent with Framsticks ... Sat, 31 Dec 2016 19:32:03 GMT Maciej Komosinski [642] * cpp/frams/vm/classes/collectionobj.cpp (modified) * cpp/frams/vm/classes/collectionobj.h (modified) Implemented insert() in FramScript Vector class Mon, 05 Dec 2016 02:34:28 GMT sz [641] * java/Framclipse/com.framsticks.framclipse/res/framscript.xml (modified) Updated for Framsticks version 5.0rc8 Mon, 05 Dec 2016 01:31:34 GMT Maciej Komosinski [640] * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/param/param.cpp (modified) * cpp/frams/param/param.h (modified) Introduced a separate function to provide a human-friendly ... Mon, 05 Dec 2016 01:29:50 GMT Maciej Komosinski [639] * cpp/frams/_demos/genotypeloader.cpp (modified) * cpp/frams/util/extvalue.cpp (modified) * cpp/frams/util/extvalue.h (modified) Introduced separate functions for formatting time. Sat, 03 Dec 2016 02:16:38 GMT sz [638] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) script updated (moveAbs, size_, pos_, center_) Sat, 03 Dec 2016 01:21:40 GMT Maciej Komosinski [637] * cpp/frams/model/modelparts.cpp (modified) Extended code so that NeuroClass properties are described in more detail Sat, 03 Dec 2016 00:52:05 GMT Maciej Komosinski [636] * cpp/frams/util/extvalue.cpp (modified) * cpp/frams/util/extvalue.h (modified) Modulo by zero is safe just as division by zero and prints analogous ... Sat, 03 Dec 2016 00:47:15 GMT Maciej Komosinski [635] * cpp/frams/_demos/genotypeloader.cpp (modified) * cpp/frams/_demos/genotypeloader.h (modified) Introduced specialized info_* fields in (Mini)Genotype that match FEC ... Fri, 25 Nov 2016 15:45:57 GMT sz [634] * experiments/frams/capture-the-flag/data/scripts/capture-the-flag.expdef (modified) * experiments/frams/deathmatch/data/scripts/deathmatch.expdef (modified) Updated for the upcoming Framsticks release - the old Shapes object ... Wed, 23 Nov 2016 16:58:33 GMT konrad [633] * mds-and-trees/tree-genealogy.py (modified) Added measure of progress (based on regression of time-distances ... Wed, 09 Nov 2016 03:35:36 GMT sz [632] * experiments/frams/capture-the-flag/data/scripts/capture-the-flag.expdef (modified) Updated to avoid using deprecated API (Creature.moveAbs, size_x/y/z, ... Wed, 09 Nov 2016 03:29:53 GMT sz [631] * experiments/frams/deathmatch/data/scripts/deathmatch-utils.inc (modified) * experiments/frams/deathmatch/data/scripts/deathmatch.expdef (modified) Updated the script to use more modern framscript features, most ... Tue, 08 Nov 2016 22:53:51 GMT sz [630] * blender-povray-animation/frams-pov-import.py (modified) added the option to write a separate "camerapath.inc" instead of ... Tue, 08 Nov 2016 22:49:22 GMT sz [629] * blender-povray-animation/frams-pov-import.py (modified) scientific notation numbers ('e') are floating point, even without a dot Thu, 27 Oct 2016 14:38:57 GMT konrad [628] * mds-and-trees/tree-genealogy.py (modified) Fixed printing texts in svg and added support for additional ... Wed, 26 Oct 2016 17:13:26 GMT konrad [627] * mds-and-trees/tree-genealogy.py (modified) tree-genealogy.py is now supporting multiple virtual parents (they ... Mon, 24 Oct 2016 13:01:12 GMT konrad [626] * mds-and-trees/tree-genealogy.py (modified) Added multisampling (antialiasing) option for raster output Fri, 21 Oct 2016 21:40:42 GMT konrad [625] * mds-and-trees/Vera.ttf (added) Font for tree-genealogy.py Fri, 21 Oct 2016 17:45:07 GMT konrad [624] * mds-and-trees/tree-genealogy.py (modified) * mds-and-trees/tree.conf (added) New, faster, more flexible and refactored version of the tree- ... Tue, 11 Oct 2016 15:19:04 GMT konrad [623] * mds-and-trees/tree-genealogy.py (modified) Some minor changes Tue, 11 Oct 2016 14:48:23 GMT konrad [622] * mds-and-trees/tree-genealogy.py (modified) Added an option to restrict the tree to first X nodes. Mon, 10 Oct 2016 15:18:52 GMT konrad [621] * mds-and-trees/tree-genealogy.py (modified) Rewritten prepos_children to the iterative form + Turned on some ... Fri, 30 Sep 2016 00:43:38 GMT konrad [620] * mds-and-trees/tree-genealogy.py (modified) The parameters should not be case specific anymore, also added some ... Fri, 23 Sep 2016 13:06:58 GMT konrad [619] * mds-and-trees/tree-genealogy.py (modified) Changed spine and skeleton drawing methods from recurrent to ... Fri, 23 Sep 2016 11:09:55 GMT konrad [618] * mds-and-trees/tree-genealogy.py (modified) Removed the recurrent version of the tree-drawing method, fixed and ... Wed, 21 Sep 2016 15:52:27 GMT konrad [617] * mds-and-trees/tree-genealogy.py (modified) Added non-recurrent verion of tree drawing function, ... Wed, 14 Sep 2016 22:07:27 GMT Maciej Komosinski [616] * mds-and-trees/mds_plot.py (modified) Introduced an option to swap (exchange) X and Y axes Sun, 11 Sep 2016 20:52:34 GMT Maciej Komosinski [615] * mds-and-trees/tree-genealogy.py (modified) Improved descriptions Sun, 11 Sep 2016 20:45:46 GMT Maciej Komosinski [614] * mds-and-trees/tree-genealogy.py (modified) Fixed typos Sun, 11 Sep 2016 01:59:38 GMT Maciej Komosinski [613] * mds-and-trees/mds_plot.py (modified) Introduced options to flip (invert, negate) X and/or Y axes Fri, 09 Sep 2016 13:22:11 GMT Maciej Komosinski [612] * cpp/frams/_demos/simil_test.cpp (modified) Updated after field rename Fri, 09 Sep 2016 13:21:47 GMT Maciej Komosinski [611] * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) Code formatting Mon, 05 Sep 2016 01:39:14 GMT Maciej Komosinski [610] * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) - Introduced levels of checking the validity of a Model - If a Joint ... Thu, 01 Sep 2016 22:06:41 GMT Maciej Komosinski [609] * mds-and-trees/mds_plot.py (modified) Labels can have colors dependent on label text Thu, 01 Sep 2016 15:01:37 GMT Maciej Komosinski [608] * mds-and-trees/mds_plot.py (modified) Displays the fraction of variance preserved after MDS Thu, 01 Sep 2016 14:39:23 GMT Maciej Komosinski [607] * mds-and-trees/mds_plot.py (modified) Updated for new format of dissimilarity matrix (with the optional two ... Tue, 30 Aug 2016 15:42:29 GMT Maciej Komosinski [606] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) Code formatting Tue, 30 Aug 2016 15:39:10 GMT Maciej Komosinski [605] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) - Added 'fixedZaxis' option to paramtab (so that it is accessible ... Tue, 30 Aug 2016 15:08:10 GMT Maciej Komosinski [604] * mds-and-trees/mds_plot.py (modified) Made the amount of jitter a continuous, adjustable parameter Sun, 28 Aug 2016 16:34:15 GMT oriona [603] * mds-and-trees/mds_plot.py (modified) Integer command line arguments converted to ints in main call. Sun, 28 Aug 2016 15:00:05 GMT Maciej Komosinski [602] * mds-and-trees/mds_plot.py (modified) - More flexible reading of distance matrices from files - Can also ... Sun, 28 Aug 2016 13:19:57 GMT oriona [601] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) Possibility of fixing z axis during the alignment added. Sun, 28 Aug 2016 13:04:25 GMT oriona [600] * mds-and-trees/mds_plot.py (modified) Number of returned dimensions set to minimum of desired number and ... Thu, 25 Aug 2016 15:48:45 GMT oriona [599] * mds-and-trees/mds_plot.py (modified) Function for computing variances removed. Thu, 25 Aug 2016 15:44:00 GMT oriona [598] * mds-and-trees/mds_plot.py (modified) MDS algorithm changed to cmdscale. Coordinates export to file added. Wed, 24 Aug 2016 01:54:42 GMT Maciej Komosinski [597] * mds-and-trees/mds_plot.py (modified) No longer ignores "jitter" and "outname" parameters Wed, 24 Aug 2016 01:52:38 GMT Maciej Komosinski [596] * mds-and-trees/mds_plot.py (modified) Uncomment to make it work with no graphical backend Tue, 23 Aug 2016 19:28:36 GMT oriona [595] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Rotation of creatures in z axis changed to random. LocalDrive usage ... Tue, 23 Aug 2016 16:13:31 GMT konrad [594] * mds-and-trees/tree-genealogy.py (modified) Fixed drawing the spine and the skeleton for the tree-genealogy.py Mon, 22 Aug 2016 13:07:18 GMT Maciej Komosinski [593] * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Added the missing visual style declaration for foraminifera creatures Sun, 21 Aug 2016 23:47:04 GMT Maciej Komosinski [592] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) More meaningful variable names Sun, 21 Aug 2016 23:43:26 GMT Maciej Komosinski [591] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Added a comment Sun, 21 Aug 2016 23:26:47 GMT oriona [590] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.show (modified) Feed period changed to food flux in grams per square meter per ... Fri, 19 Aug 2016 21:59:09 GMT konrad [589] * mds-and-trees/tree-genealogy.py (modified) Fixed dark lines inside lines in tree-genealogy.py Fri, 19 Aug 2016 09:35:59 GMT oriona [588] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Movement of forams in z axis restricted. Thu, 18 Aug 2016 22:27:50 GMT oriona [587] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Enhanced nutrient visualization corrected. Thu, 18 Aug 2016 20:01:16 GMT konrad [586] * mds-and-trees/tree-genealogy.py (modified) Tiny refactoring of tree-genealogy.py Thu, 18 Aug 2016 19:58:00 GMT konrad [585] * mds-and-trees/tree-genealogy.py (modified) Added an option for defining colors of crossover / mutation lines ... Thu, 18 Aug 2016 19:37:53 GMT oriona [584] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Positions of foraminifera, reticulopodia and nutrients corrected. Thu, 18 Aug 2016 13:35:44 GMT oriona [583] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Chamber growth visualization moved to the separate function. Thu, 18 Aug 2016 12:41:35 GMT Maciej Komosinski [582] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Added comments and TODOs Thu, 18 Aug 2016 12:09:00 GMT Maciej Komosinski [581] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Brighter colors Thu, 18 Aug 2016 10:30:10 GMT oriona [580] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Vertical position of enhanced visualization of nutrient lowered. Thu, 18 Aug 2016 10:15:55 GMT oriona [579] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Vertical position of foraminifera lowered. Color of body and ... Tue, 09 Aug 2016 19:29:40 GMT sz [578] * blender-povray-animation/frams-pov-import.py (modified) object creation and removal is now reflected in the blender scene ... Tue, 09 Aug 2016 17:38:35 GMT konrad [577] * mds-and-trees/tree-genealogy.py (modified) Supporting coloring edges and nodes by type, scalable dots Tue, 09 Aug 2016 16:30:33 GMT konrad [576] * mds-and-trees/tree-genealogy.py (modified) Simple scale Mon, 08 Aug 2016 23:09:38 GMT Maciej Komosinski [575] * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) When the last chamber is growing, make it gray and add extra ... Mon, 08 Aug 2016 23:08:59 GMT Maciej Komosinski [574] * cpp/frams/param/param.cpp (modified) * cpp/frams/param/param.h (modified) More strict validation of numeric type definitions: min without max ... Mon, 08 Aug 2016 20:49:00 GMT oriona [573] * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Inherited entry for cross-over corrected. Mon, 08 Aug 2016 18:13:29 GMT konrad [572] * mds-and-trees/tree-genealogy.py (modified) Added crossover and support for Inheritance table (but the table ... Mon, 08 Aug 2016 14:10:18 GMT konrad [571] * mds-and-trees/tree-genealogy.py (modified) Additional options in tree-genealogy.py, dots and jitter Sun, 07 Aug 2016 23:00:17 GMT Maciej Komosinski [570] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Improved help message Sun, 07 Aug 2016 22:49:30 GMT oriona [569] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.show (modified) Chamber growth visualization time extended. Nutrient energy corrected. Sun, 07 Aug 2016 15:02:16 GMT oriona [568] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.show (modified) Used secPerStep values added in help, setPerStep in show set to 50. Sun, 07 Aug 2016 13:05:16 GMT oriona [567] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.show (modified) Chamber growth visualization added, [OFFSPRING] message added, ... Sat, 06 Aug 2016 00:16:56 GMT konrad [566] * mds-and-trees/tree-genealogy.py (modified) Added REAL time option for tree-genealogy.py, renamed previous REAL ... Fri, 05 Aug 2016 23:27:20 GMT oriona [565] * mds-and-trees/mds_plot.py (added) Script for plotting results of the MDS added. Fri, 05 Aug 2016 21:25:02 GMT konrad [564] * mds-and-trees/tree-genealogy.py (modified) some changes to drawing style + non-random dissimilarity + assertion Fri, 05 Aug 2016 21:15:07 GMT konrad [563] * mds-and-trees/tree-genealogy.py (modified) updated to the new input format Fri, 05 Aug 2016 18:23:52 GMT Maciej Komosinski [562] * mds-and-trees (added) * mds-and-trees/tree-genealogy.py (added) Added a script to draw genealogical trees based on parent-child ... Thu, 04 Aug 2016 21:32:33 GMT Maciej Komosinski [561] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) 7% chamber growth instead of 5%; tighter spiral in morphology Tue, 02 Aug 2016 22:29:49 GMT Maciej Komosinski [560] * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Fixed a typo Tue, 02 Aug 2016 19:21:29 GMT Maciej Komosinski [559] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Foram genotype generator can produce genotypes with the last chamber ... Tue, 02 Aug 2016 18:42:50 GMT Maciej Komosinski [558] * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) - Add color to Parts - Tighter spiral Tue, 02 Aug 2016 16:52:31 GMT Maciej Komosinski [557] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) - Fixed extra space after property ID - A function to generate ... Mon, 01 Aug 2016 13:31:19 GMT oriona [556] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Properties descriptions corrected. Sun, 31 Jul 2016 21:33:07 GMT oriona [555] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Visual style for enhanced nutrients restored. Sun, 31 Jul 2016 21:26:43 GMT oriona [554] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Refactoring, change of foraminifera direction at world boundary added. Sun, 31 Jul 2016 00:25:25 GMT Maciej Komosinski [553] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) Added visual style for "enhanced nutrients" Sat, 30 Jul 2016 13:18:59 GMT oriona [552] * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) Dir_changed_sec changed from global to ExpProperty, new divisionCost ... Sat, 30 Jul 2016 01:19:31 GMT Maciej Komosinski [551] * cpp/frams/genetics/preconfigured.h (modified) PreconfiguredGenetics warns about unexpected use case and unregisters ...