Changeset 520 for cpp/frams/_demos/loader_test_geno.cpp
- Timestamp:
- 06/22/16 16:41:58 (7 years ago)
- File:
-
- 1 edited
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cpp/frams/_demos/loader_test_geno.cpp
r515 r520 11 11 12 12 \include loader_test.cpp 13 */13 */ 14 14 15 int main(int argc, char*argv[])15 int main(int argc, char*argv[]) 16 16 { 17 if (argc<2)17 if (argc < 2) 18 18 { 19 fprintf(stderr,"Arguments: filename [genotype name or index (1-based) [field name]]\n"20 21 22 );23 return 1;19 fprintf(stderr, "Arguments: filename [genotype name or index (1-based) [field name]]\n" 20 "If a genotype is indicated (by providing the optional genotype identifier), the program will output the raw genotype, suitable for Framsticks Theater's genotype viewer mode. If a genotype and a field name is given, the field value (instead of the raw genotype) is printed. If the second argument is not given, the genotype names from the file will be listed.\n" 21 "Example: loader_test walking.gen \"Basic Quadruped\" | theater -g -\n" 22 ); 23 return 1; 24 24 } 25 25 26 long count=0,totalsize=0;27 StdioFileSystem_autoselect stdiofilesys;28 MiniGenotypeLoader loader(argv[1]);29 const char* selected=(argc<3)?NULL:argv[2];30 const char* field_name=(argc<4)?NULL:argv[3];31 int selected_index=(selected&&isdigit(selected[0]))?atol(selected):0;32 // using char* constructor (passing the file name to open)33 MiniGenotype *loaded;34 while(loaded=loader.loadNextGenotype())26 long count = 0, totalsize = 0; 27 StdioFileSystem_autoselect stdiofilesys; 28 MiniGenotypeLoader loader(argv[1]); 29 const char* selected = (argc < 3) ? NULL : argv[2]; 30 const char* field_name = (argc < 4) ? NULL : argv[3]; 31 int selected_index = (selected&&isdigit(selected[0])) ? atol(selected) : 0; 32 // using char* constructor (passing the file name to open) 33 MiniGenotype *loaded; 34 while (loaded = loader.loadNextGenotype()) 35 35 { // if loaded != NULL then the "org:" object data was 36 37 count++;38 totalsize+=loaded->genotype.len();39 if (selected)36 // loaded into MiniGenotype object 37 count++; 38 totalsize += loaded->genotype.len(); 39 if (selected) 40 40 { 41 if (selected_index)41 if (selected_index) 42 42 { 43 if (selected_index!=count)44 continue;43 if (selected_index != count) 44 continue; 45 45 } 46 else46 else 47 47 { 48 if (strcmp(loaded->name.c_str(),selected))49 continue;48 if (strcmp(loaded->name.c_str(), selected)) 49 continue; 50 50 } 51 if (field_name)51 if (field_name) 52 52 { 53 Param p(minigenotype_paramtab,loaded);54 int field_index=p.findId(field_name);55 if (field_index<0)53 Param p(minigenotype_paramtab, loaded); 54 int field_index = p.findId(field_name); 55 if (field_index < 0) 56 56 { 57 printf("Field '%s' not found\n",field_name);58 return 3;57 printf("Field '%s' not found\n", field_name); 58 return 3; 59 59 } 60 else61 puts(p.get(field_index).c_str());62 60 else 61 puts(p.get(field_index).c_str()); 62 } 63 63 else 64 64 puts(loaded->genotype.c_str()); 65 return 0; 66 } 67 fprintf(stderr, "%d. %s\t(%d characters)\n", count, loaded->name.c_str(), loaded->genotype.len()); 68 } 69 // the loop repeats until loaded==NULL, which could be beacause of error 70 if (loader.getStatus() == MiniGenotypeLoader::OnError) 71 fprintf(stderr, "Error: %s", loader.getError().c_str()); 72 // (otherwise it was the end of the file) 73 if (selected) 74 { 75 fprintf(stderr, "genotype %s not found in %s\n", selected, argv[1]); 76 return 2; 77 } 78 else 79 { 80 fprintf(stderr, "\ntotal: %d items, %d characters\n", count, totalsize); 65 81 return 0; 66 }67 fprintf(stderr,"%d. %s\t(%d characters)\n",count,loaded->name.c_str(),loaded->genotype.len());68 }69 // the loop repeats until loaded==NULL, which could be beacause of error70 if (loader.getStatus()==MiniGenotypeLoader::OnError)71 fprintf(stderr,"Error: %s",loader.getError().c_str());72 // (otherwise it was the end of the file)73 if (selected)74 {75 fprintf(stderr,"genotype %s not found in %s\n",selected,argv[1]);76 return 2;77 }78 else79 {80 fprintf(stderr,"\ntotal: %d items, %d characters\n",count,totalsize);81 return 0;82 82 } 83 83 }
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