Changeset 475 for experiments/frams/foraminifera/data

Timestamp:

03/13/16 01:20:30 (9 years ago)

Author:

oriona

Message:

Energy calculated as a volume of the sphere. Energy usage calculated as a percent of current energy.

File:

• experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) (11 diffs)

experiments/frams/foraminifera/data/scripts/foraminifera.expdef

@@ -84 +84 @@
         //time
         ExpParams.secPerStep = 60;
-        ExpParams.foramSpeedMmPerMin = 0.1;
+        ExpParams.foramSpeedMmPerMin = 0.05;
         movePerStep = getMovePerStep();
 
@@ -100 +100 @@
         //morphology
         dir_change = 30000;
-        ExpParams.zone1_range = micronsToFrams(3000);
-        ExpParams.zone2_range = micronsToFrams(6000);
+        ExpParams.zone1_range = micronsToFrams(1000);
+        ExpParams.zone2_range = micronsToFrams(3000);
         init_chambers();
         ExpParams.chamber_proculus_haplo = micronsToFrams(50);
@@ -112 +112 @@
                 for (var i = 0; i < chambers[0].size; i++)
                 {
-                        max_chamber_energ[j].add(((Math.pow(getProperty(j, "chamber_proculus"),3) + Math.pow(getProperty(j, "chamber_proculus") + (i) * getProperty(j, "chamber_difference"),3))*(i+1))/2);
+                        max_chamber_energ[j].add(((energyFromVolume(getProperty(j, "chamber_proculus")) + energyFromVolume(getProperty(j, "chamber_proculus") + (i) * getProperty(j, "chamber_difference")))*(i+1))/2);
                 }                                  
         }
@@ -132 +132 @@
         //nutrients
         ExpParams.nutrientsize = micronsToFrams(10);
-        ExpParams.energy_nut = 100 * Math.pow(ExpParams.nutrientsize, 3);
+        ExpParams.energy_nut = 100 * energyFromVolume(ExpParams.nutrientsize);
         ExpParams.nutrientPop = 1;
         ExpParams.feedrate = 100;
@@ -141 +141 @@
 
 @include "standard_placement.inc"
+
+function energyFromVolume(radius)
+{
+        return 4.0/3.0*Math.pi*Math.pow(radius,3);
+}
 
 function getMovePerStep()
@@ -258 +263 @@
 function setForamMeta(cr, gen)
 {
-        cr.idleen = (ExpParams.e_meta * max_chamber_energ[gen][Math.min(lastChamberNum(cr), max_chamber_energ[gen].size-1)])*ExpParams.secPerStep;
+        //cr.idleen = (ExpParams.e_meta * max_chamber_energ[gen][Math.min(lastChamberNum(cr), max_chamber_energ[gen].size-1)])*ExpParams.secPerStep;
+        cr.idleen = (ExpParams.e_meta * cr.energy)*ExpParams.secPerStep;
 }
 
@@ -384 +390 @@
         if (cr.user2["hibernated"] == 0)
         {
-                cr.energy_m += (ExpParams.energy_move * max_chamber_energ[cr.user2["gen"]][Math.min(lastChamberNum(cr), (max_chamber_energ[cr.user2["gen"]].size)-1)])*ExpParams.secPerStep;
+                //cr.energy_m += (ExpParams.energy_move * max_chamber_energ[cr.user2["gen"]][Math.min(lastChamberNum(cr), (max_chamber_energ[cr.user2["gen"]].size)-1)])*ExpParams.secPerStep;
+                cr.energy_m += (ExpParams.energy_move * cr.energy)*ExpParams.secPerStep;
         }
 }
@@ -457 +464 @@
         else
         {
-                cr.idleen = (ExpParams.energy_hib * max_chamber_energ[cr.user2["gen"]][Math.min(lastChamberNum(cr), (max_chamber_energ[cr.user2["gen"]].size)-1)])*ExpParams.secPerStep; //hibernate
+                //cr.idleen = (ExpParams.energy_hib * max_chamber_energ[cr.user2["gen"]][Math.min(lastChamberNum(cr), (max_chamber_energ[cr.user2["gen"]].size)-1)])*ExpParams.secPerStep; //hibernate
+                cr.idleen = (ExpParams.energy_hib * cr.energy)*ExpParams.secPerStep; //hibernate
         }
         cr.user2["hibernated"] = 1 - cr.user2["hibernated"];
@@ -496 +504 @@
 function deathConditions(cr)
 {
-        if ((cr.energy <= ExpParams.e_death_level) || (Math.rnd01 < ExpParams.hunted_prob))
+        if ((cr.energy <= getProperty(cr.user2["species"],"e_death_level")) || (Math.rnd01 < ExpParams.hunted_prob))
                 return 1;
         else
@@ -781 +789 @@
 
 prop:
+id:e_death_level_haplo
+name:Minimal level of energy to sustain life of haploid
+type:f 0 20 4
+group:Foraminifera
+
+prop:
+id:e_death_level_diplo
+name:Minimal level of energy to sustain life of diploid
+type:f 0 20 0.25
+group:Foraminifera
+
+prop:
 id:energy_hib
 name:Energy used for hibernation during one step
@@ -820 +840 @@
 name:Mutation probability
 type:f 0 1 0
-group:Foraminifera
-
-prop:
-id:e_death_level
-name:Minimal level of energy to sustain life
-type:f 0 20 0
 group:Foraminifera