Changeset 349

Timestamp:

04/16/15 21:56:52 (10 years ago)

Author:

oriona

Message:

implementation of the similarity measure

Location:

cpp/frams

Files:

• Makefile-SDK (modified) (2 diffs)
• Makefile-SDK-files (modified) (2 diffs)
• _demos/simil_match_test.cpp (added)
• _demos/simil_test.cpp (added)
• model/similarity (added)
• model/similarity/SVD (added)
• model/similarity/SVD/lapack.cpp (added)
• model/similarity/SVD/lapack.h (added)
• model/similarity/SVD/matrix_tools.cpp (added)
• model/similarity/SVD/matrix_tools.h (added)
• model/similarity/simil_match.cpp (added)
• model/similarity/simil_match.h (added)
• model/similarity/simil_model.cpp (added)
• model/similarity/simil_model.h (added)

cpp/frams/Makefile-SDK

@@ -5 +5 @@
 include frams/Makefile-SDK-files
 
-SDK_TESTS=genoconv_test genomanipulation geno_test genooper_test genooper_test_fTest neuro_test loader_test loader_test_param serial_test multiline_f0_test f0_variants_test full_props shapeconvert part_shapes neuro_layout_test geometry_apices_test geometry_info_test geometry_surface_test geometry_volume_test
+SDK_TESTS=genoconv_test genomanipulation geno_test genooper_test genooper_test_fTest neuro_test loader_test loader_test_param serial_test multiline_f0_test f0_variants_test full_props shapeconvert part_shapes neuro_layout_test geometry_apices_test geometry_info_test geometry_surface_test geometry_volume_test simil_test simil_unit_test
 
 sdk_tests: $(SDK_TESTS)
@@ -73 +73 @@
         $(CXX) $(GEOMETRY_VOLUME_TEST_OBJS) $(LDFLAGS) -o $@
 
+simil_test: $(SIMIL_TEST_OBJS)
+        $(CXX) $(SIMIL_TEST_OBJS) $(LDFLAGS) -o $@
+        
+simil_unit_test: $(SIMIL_UNIT_TEST_OBJS)
+        $(CXX) $(SIMIL_UNIT_TEST_OBJS) $(LDFLAGS) -o $@
 
 #############################################
 
-ALL_OBJS=$(GENOMANIPULATION_OBJS) $(GENOCONV_TEST_OBJS) $(GENO_TEST_OBJS) $(NEURO_TEST_OBJS) $(LOADER_TEST_OBJS) $(SERIAL_TEST_OBJS) $(MULTILINE_F0_OBJS) $(F0_VARIANTS_OBJS) $(FULL_PROPS_OBJS) $(PART_SHAPES_OBJS) $(NEURO_LAYOUT_TEST_OBJS) $(GENOOPER_TEST_OBJS) $(GEOMETRY_APICES_TEST_OBJS) $(GEOMETRY_INFO_TEST_OBJS) $(GEOMETRY_SURFACE_TEST_OBJS) $(GEOMETRY_VOLUME_TEST_OBJS)
+ALL_OBJS=$(GENOMANIPULATION_OBJS) $(GENOCONV_TEST_OBJS) $(GENO_TEST_OBJS) $(NEURO_TEST_OBJS) $(LOADER_TEST_OBJS) $(SERIAL_TEST_OBJS) $(MULTILINE_F0_OBJS) $(F0_VARIANTS_OBJS) $(FULL_PROPS_OBJS) $(PART_SHAPES_OBJS) $(NEURO_LAYOUT_TEST_OBJS) $(GENOOPER_TEST_OBJS) $(GEOMETRY_APICES_TEST_OBJS) $(GEOMETRY_INFO_TEST_OBJS) $(GEOMETRY_SURFACE_TEST_OBJS) $(GEOMETRY_VOLUME_TEST_OBJS) $(SIMIL_TEST_OBJS) $(SIMIL_UNIT_TEST_OBJS)
 
 include frams/Makefile-maintain

cpp/frams/Makefile-SDK-files

@@ -2 +2 @@
 
 # ALL_DIRS is later expanded by the shell, no spaces/newlines allowed, or it breaks
-ALL_DIRS={common,frams,frams/canvas,frams/config,frams/errmgr,frams/genetics,frams/genetics/f0,frams/genetics/f1,frams/genetics/f2,frams/genetics/f3,frams/genetics/f4,frams/genetics/f5,frams/genetics/f6,frams/genetics/f7,frams/genetics/f8,frams/genetics/f9,frams/genetics/fF,frams/genetics/fT,frams/model,frams/neuro,frams/neuro/impl,frams/param,frams/test,frams/util,frams/vm/classes,frams/virtfile,frams/_demos,frams/model/geometry,frams/_demos/geometry}
+ALL_DIRS={common,frams,frams/canvas,frams/config,frams/errmgr,frams/genetics,frams/genetics/f0,frams/genetics/f1,frams/genetics/f2,frams/genetics/f3,frams/genetics/f4,frams/genetics/f5,frams/genetics/f6,frams/genetics/f7,frams/genetics/f8,frams/genetics/f9,frams/genetics/fF,frams/genetics/fT,frams/model,frams/neuro,frams/neuro/impl,frams/param,frams/test,frams/util,frams/vm/classes,frams/virtfile,frams/_demos,frams/model/geometry,frams/_demos/geometry,frams/similarity,frams/similarity/SVD}
 
 GENMANF4=frams/genetics/f4/oper_f4.o
@@ -64 +64 @@
 
 GEOMETRY_APICES_TEST_OBJS=frams/_demos/geometry/apices_test.o frams/_demos/geometry/geometrytestutils.o frams/_demos/genotypeloader.o frams/virtfile/virtfile.o frams/param/multiparamload.o frams/virtfile/stdiofile.o $(SDK_OBJS) $(GENOCONV_SDK_OBJS) $(GEOMETRY_OBJS)
+
+SIMIL_TEST_OBJS=frams/_demos/simil_test.o frams/model/similarity/SVD/lapack.o frams/model/similarity/SVD/matrix_tools.o frams/model/similarity/simil_match.o frams/model/similarity/simil_model.o  \
+     frams/_demos/genotypeloader.o frams/virtfile/virtfile.o frams/param/multiparamload.o frams/virtfile/stdiofile.o frams/errmgr/stdouterr.o $(SDK_OBJS) $(GENOCONV_SDK_OBJS) $(GENMAN_SDK_OBJS)
+
+SIMIL_UNIT_TEST_OBJS=frams/_demos/simil_match_test.o frams/model/similarity/simil_match.o