Changeset 1019

Timestamp:

07/21/20 14:45:30 (4 years ago)

Author:

Maciej Komosinski

Message:

Better filename extensions for files with results; .gen was misleading in some cases

File:

• framspy/FramsticksCLI.py (modified) (2 diffs)

framspy/FramsticksCLI.py

@@ -37 +37 @@
         CROSSOVER_FILE = "child.gen"
         DISSIMIL_CMD = "dissimil"
-        DISSIMIL_FILE = "dissimilarity_matrix.gen"
+        DISSIMIL_FILE = "dissimilarity_matrix.tsv"  # tab-separated values
         ISVALID_CMD = "isvalid"
-        ISVALID_FILE = "validity.gen"
+        ISVALID_FILE = "validity.txt"
         MUTATE_CMD = "mutate"
         MUTATE_FILE = "mutant.gen"
@@ -260 +260 @@
                 for i in range(len(square_matrix)):
                         assert square_matrix[i][i] == 0, "Not a correct dissimilarity matrix, diagonal expected to be 0"
-                assert (square_matrix == square_matrix.T).all(), "Probably not a correct dissimilarity matrix, expecting symmetry, verify this"
+                assert (square_matrix == square_matrix.T).all(), "Probably not a correct dissimilarity matrix, expecting symmetry, verify this"  # could introduce tolerance in comparison (e.g. class field DISSIMIL_DIFF_TOLERANCE=10^-5) so that miniscule differences do not fail here
                 self.__cleanUpCommandResults(files)
                 return square_matrix