package cecj.statistics; import java.io.File; import java.io.IOException; import ec.EvolutionState; import ec.Individual; import ec.Statistics; import ec.util.Output; import ec.util.Parameter; public class AverageObjectiveFitnessStatistics extends Statistics { private static final String P_COUNT_LAST = "count-last"; private static final String P_FREQUENCY = "frequency"; private static final String P_FITNESS_CALCULATOR = "fitness-calc"; private static final String P_FITNESS_FILE = "fitness-file"; public int fitnessStatisticslog; public AverageObjectiveFitnessStatistics() { fitnessStatisticslog = 0; } private int frequency; private ObjectiveFitnessCalculator fitnessCalc; private int countLast; private int lastCounter; private float sumLastFitnesses; private float lastFitnesses[]; public void setup(EvolutionState state, Parameter base) { super.setup(state, base); Parameter countLastParam = base.push(P_COUNT_LAST); countLast = state.parameters.getIntWithDefault(countLastParam, null, -1); if (countLast != -1) { lastFitnesses = new float[countLast]; lastCounter = 0; sumLastFitnesses = 0.0f; } Parameter fitnessCalcParameter = base.push(P_FITNESS_CALCULATOR); fitnessCalc = (ObjectiveFitnessCalculator) state.parameters .getInstanceForParameter(fitnessCalcParameter, null, ObjectiveFitnessCalculator.class); fitnessCalc.setup(state, fitnessCalcParameter); Parameter frequencyParam = base.push(P_FREQUENCY); frequency = state.parameters.getIntWithDefault(frequencyParam, null, 1); File fitnessStatisticsFile = state.parameters.getFile(base.push(P_FITNESS_FILE), null); if (fitnessStatisticsFile != null) { try { fitnessStatisticslog = state.output.addLog(fitnessStatisticsFile, Output.V_VERBOSE, false, true, false); } catch (IOException i) { state.output.fatal("An IOException occurred while trying to create the log " + fitnessStatisticsFile + ":\n" + i); } } } public void postEvaluationStatistics(EvolutionState state) { super.postEvaluationStatistics(state); if ((state.generation % frequency != 0) && (state.generation != state.numGenerations - 1)) { return; } for (int subpop = 0; subpop < state.population.subpops.length; ++subpop) { float sumFitness = 0; float maxFitness = Float.NEGATIVE_INFINITY; float maxSubjectiveFitness = Float.NEGATIVE_INFINITY; float objectiveFitnessOfSubjectivelyBest = -1; float[] fitnesses = new float[state.population.subpops[subpop].individuals.length]; for (int i = 0; i < state.population.subpops[subpop].individuals.length; ++i) { Individual ind = state.population.subpops[subpop].individuals[i]; fitnesses[i] = fitnessCalc.calculateObjectiveFitness(state, ind); sumFitness += fitnesses[i]; maxFitness = Math.max(maxFitness, fitnesses[i]); if (ind.fitness.fitness() > maxSubjectiveFitness) { maxSubjectiveFitness = ind.fitness.fitness(); objectiveFitnessOfSubjectivelyBest = fitnesses[i]; } } float sumSquareDiffs = 0; float avgFitness = sumFitness / state.population.subpops[subpop].individuals.length; for (int i = 0; i < state.population.subpops[subpop].individuals.length; ++i) { float diff = fitnesses[i] - avgFitness; sumSquareDiffs += (diff * diff); } double stdev = Math.sqrt(sumSquareDiffs / state.population.subpops[subpop].individuals.length); if (countLast != -1) { sumLastFitnesses -= lastFitnesses[lastCounter]; sumLastFitnesses += objectiveFitnessOfSubjectivelyBest; lastFitnesses[lastCounter] = objectiveFitnessOfSubjectivelyBest; lastCounter++; lastCounter %= countLast; float avgLastFitness = sumLastFitnesses / countLast; state.output.println(state.generation + "\t" + avgFitness + "\t" + stdev + "\t" + maxFitness + "\t" + objectiveFitnessOfSubjectivelyBest + "\t" + avgLastFitness, Output.V_VERBOSE + 1, fitnessStatisticslog); } else { state.output.println(state.generation + "\t" + avgFitness + "\t" + stdev + "\t" + maxFitness + "\t" + objectiveFitnessOfSubjectivelyBest, Output.V_VERBOSE + 1, fitnessStatisticslog); } } if (state.generation == state.numGenerations - 1) { saveIndividuals(state); } } private void saveIndividuals(EvolutionState state) { for (int subpop = 0; subpop < state.population.subpops.length; ++subpop) { state.output.println("\nSubpopulation " + subpop + " individuals : ", Output.V_VERBOSE + 1, fitnessStatisticslog); Individual[] inds = state.population.subpops[subpop].individuals; for (Individual ind : inds) { ind.printIndividual(state, fitnessStatisticslog, Output.V_VERBOSE + 1); } } } }