1 | //size versus energy
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2 | //real proportions
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3 |
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4 | function init_chambers()
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5 | {
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6 | colors = ["1.0,1.0,0.0","1.0,0.5,0.0"];
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7 | chambers = [ ["//0\np:sh=1,",
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8 | "p:0.98089325428009, 0.00591040402650833, 0.00389722990803421,",
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9 | "p:1.90962779521942, -0.256769120693207, -0.16194811463356,",
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10 | "p:2.63965249061584, -0.727959632873535, -0.609036147594452,",
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11 | "p:3.17575979232788, -1.34843015670776, -1.14828503131866,",
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12 | "p:3.55273032188416, -2.22369408607483, -1.3917418718338,",
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13 | "p:3.64916682243347, -3.11888360977173, -1.01666414737701,",
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14 | "p:3.50461649894714, -3.84039807319641, -0.377427101135254,",
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15 | "p:3.15921688079834, -4.50001525878906, 0.261153399944305,",
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16 | "p:2.51528453826904, -5.16421365737915, 0.59241509437561,"],
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17 | ["//0\np:sh=1,",
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18 | "p:1.08020961284637, -0.0597195439040661, -0.0393781512975693,",
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19 | "p:1.08020961284637, -0.0597195439040661, -0.0393781512975693,",
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20 | "p:0.615013539791107, 0.778662621974945, 0.535521030426025,",
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21 | "p:0.488581955432892, 0.826426684856415, -0.381044268608093,",
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22 | "p:0.732419908046722, -0.0084995785728097, -1.02214300632477,",
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23 | "p:1.35288727283478, 0.875738024711609, -1.03719782829285,",
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24 | "p:0.342692613601685, 0.938660383224487, -1.45657968521118,",
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25 | "p:1.0958571434021, 0.316927701234818, -1.813929438591,",
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26 | "p:0.903768002986908, 1.11856341362, -2.53161096572876,",
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27 | "p:0.21014116704464, 0.295340299606323, -2.45328187942505,"] ];
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28 | }
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29 |
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30 | function createForamGenotype(gen, species, chamber_num)
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31 | {
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32 | var rad = getProperty(gen, "chamber_proculus");
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33 | var geno = chambers[species][0] + "sx=" + rad + ",sy=" + rad + ",sz=" + rad + ", rz=3.14159265358979,vr=" + colors[gen];
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34 |
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35 | chamber_num = Math.min(chamber_num, chambers[species].size - 1);
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36 |
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37 | for (var i = 0; i < chamber_num; i++)
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38 | {
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39 | rad = getProperty(gen, "chamber_proculus") + getProperty(gen, "chamber_difference") * (i + 1);
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40 | geno += "\n" + chambers[species][i+1] + "sh=1,sx=" + rad + ",sy=" + rad + ",sz=" + rad + ",vr=" + colors[gen];
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41 | }
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42 |
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43 | for (var i = 0; i < chamber_num; i++)
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44 | {
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45 | geno += "\n" + "j:"+ i +", "+ (i+1) +", sh=1";
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46 | }
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47 | if (species == 1) geno += "\nn:p=0,d=\"S\"";
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48 |
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49 | return geno;
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50 | }
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51 |
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52 | function setGenotype(mode)
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53 | {
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54 | if (mode["opt"] == 0) //initial
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55 | {
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56 | mode["cr"].user1 = {"min_repro_energies" : [getProperty(0, "min_repro_energ"), getProperty(1, "min_repro_energ")], "hibernation" : 1 - mode["species"]};
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57 | mode["cr"].user2 = {"max_energy_level" : getProperty(0,"energies0"), "gen" : 0, "hibernated" : 0, "species" : mode["species"], "reproduce" : 0};
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58 | }
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59 | else if (mode["opt"] == 1) //child
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60 | {
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61 | mode["cr"].user2 = {"max_energy_level" : getProperty(1 - mode["parent_user2"]["gen"],"energies0"), "gen" : 1 - mode["parent_user2"]["gen"], "hibernated" : 0, "species" : mode["parent_user2"]["species"], "reproduce" : 0};
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62 | mode["cr"].user1 = mode["parent_user1"];
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63 | }
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64 | else //grow
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65 | {
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66 | mode["cr"].user1 = mode["parent_user1"];
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67 | mode["cr"].user2 = mode["parent_user2"];
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68 | }
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69 | }
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70 |
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71 | function reproduce_haploid(parent, parent2, clone)
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72 | {
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73 | var number, energy0, new_user1, gen;
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74 | if (clone == 1)
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75 | {
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76 | energy0 = getProperty(0,"energies0");
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77 | number = getProperty(1, "e_repro_cost") * parent.energy / energy0;
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78 | new_user1 = parent.user1;
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79 | parent.user2["gen"] = 1 - parent.user2["gen"]; //because of reversal of "gen" in createOffspring function
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80 | gen = parent.user2["gen"];
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81 | }
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82 | else
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83 | {
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84 | energy0 = getProperty(1,"energies0");
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85 | number = getProperty(parent.user2["gen"], "e_repro_cost") * parent.energy / energy0 + getProperty(parent.user2["gen"], "e_repro_cost") * parent2.energy / energy0;
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86 | new_user1 = [parent.user1, parent2.user1];
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87 | gen = 1 - parent.user2["gen"];
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88 | }
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89 |
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90 | Simulator.print("number of offspring: " + number);
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91 |
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92 | for (var j = 0; j < number; j++)
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93 | {
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94 | createOffspring(createForamGenotype(gen, parent.user2["species"], 0), energy0, new_user1, parent.user2);
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95 | }
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96 | }
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97 |
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98 | function reproduce_diploid(parent)
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99 | {
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100 | var energy0 = getProperty(0,"energies0");
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101 | var number = getProperty(parent.user2["gen"], "e_repro_cost") * parent.energy / energy0;
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102 |
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103 | Simulator.print("number of offspring: " + number);
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104 |
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105 | for (var j = 0; j < number / 2; j++)
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106 | {
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107 | var crossed = 0;
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108 | //crossover
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109 | if (Math.rnd01 < ExpParams.crossprob)
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110 | {
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111 | crossover(parent, "min_repro_energies");
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112 | crossed = 1;
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113 | }
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114 |
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115 | for (var k = 0; k < 2; k++)
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116 | {
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117 | createOffspring(createForamGenotype(1 - parent.user2["gen"], parent.user2["species"], 0), energy0, parent.user1[0], parent.user2);
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118 | }
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119 |
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120 | //reverse of crossover for fossilization
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121 | if (crossed == 1)
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122 | {
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123 | crossover(parent, "min_repro_energies");
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124 | crossed = 0;
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125 | }
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126 |
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127 | }
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128 | }
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129 |
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130 | function reproduce_parents(species)
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131 | {
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132 | var parent1 = null;
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133 | var parent2 = null;
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134 | var pop = Populations[0];
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135 | for (var i = pop.size-1; i >= 0; i--)
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136 | {
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137 | if (pop[i].user2["reproduce"] == 1 && pop[i].user2["species"] == species)
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138 | {
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139 | if ((pop[i].user2["gen"]==1) || ((pop[i].user2["gen"]==0) && ExpParams.stress == 0))
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140 | {
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141 | continue;
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142 | }
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143 | else if (parent1 == null)
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144 | {
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145 | parent1 = pop[i];
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146 | }
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147 | else if (parent2 == null)
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148 | {
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149 | parent2 = pop[i];
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150 | }
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151 | else
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152 | {
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153 | reproduce_haploid(parent1, parent2, 0);
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154 | print_repro_info(parent1);
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155 | print_repro_info(parent2);
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156 | pop.kill(parent1);
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157 | pop.kill(parent2);
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158 | parent1 = null;
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159 | parent2 = null;
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160 | }
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161 |
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162 | }
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163 | }
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164 | }
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165 |
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166 | function readyToRepro(cr)
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167 | {
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168 | var reproduced = 1;
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169 |
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170 |
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171 | if (cr.user2["gen"] == 1)
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172 | {
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173 | reproduce_diploid(cr);
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174 | }
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175 |
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176 | else if (ExpParams.stress == 0)
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177 | {
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178 | reproduce_haploid(cr, null, 1);
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179 | }
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180 |
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181 | else
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182 | {
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183 | if (cr.signals.size == 0)
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184 | {
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185 | cr.signals.add("repro"+cr.user2["species"]);
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186 | cr.signals[0].power = 1;
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187 | }
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188 | reproduced = 0;
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189 | cr.user2["reproduce"] = 1;
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190 | }
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191 |
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192 | if (reproduced == 1)
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193 | {
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194 | print_repro_info(cr);
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195 | Populations[0].kill(cr);
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196 | }
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197 |
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198 | return reproduced;
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199 | }
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200 |
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201 | function print_repro_info(cr)
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202 | {
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203 | Simulator.print("Reproduced " + cr.user2["gen"] + " of species " + cr.user2["species"] + " energy: " + cr.energy);
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204 | }
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205 |
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206 | function foramReproduce(cr)
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207 | {
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208 | var properEnergy = 0;
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209 | var reproduced = 0;
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210 |
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211 | if (cr.user2["gen"] == 0)
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212 | {
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213 | properEnergy = ( cr.energy >= cr.user1["min_repro_energies"][cr.user2["gen"]] );
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214 | }
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215 | else
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216 | {
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217 | properEnergy = ( cr.energy >= cr.user1[0]["min_repro_energies"][cr.user2["gen"]] ); //TODO gene selection
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218 | }
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219 |
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220 | //if creature has proper energy
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221 | if ( properEnergy && cr.signals.size == 0)
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222 | {
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223 | //reproduce with probability repro_prob
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224 | if (Math.rnd01 <= ExpParams.repro_prob) //TODO env trigger
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225 | {
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226 | reproduced = readyToRepro(cr);
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227 | }
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228 | else if (cr.signals.receive("repro"+cr.user2["species"]) > 0)
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229 | {
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230 | reproduced = readyToRepro(cr);
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231 | }
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232 | if (reproduced == 1)
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233 | return;
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234 | }
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235 |
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236 | else if (!properEnergy)
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237 | {
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238 | cr.signals.clear();
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239 | cr.user2["reproduce"] = 0;
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240 | }
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241 | }
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242 |
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243 | function crossover(parent, gene)
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244 | {
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245 | var tmp = parent.user1[0][gene];
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246 | parent.user1[0][gene] = parent.user1[1][gene];
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247 | parent.user1[1][gene] = tmp;
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248 | }
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249 |
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250 | function createOffspring(geno, energy, parent_user1, parent_user2)
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251 | {
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252 | var cr = Populations[0].add(geno);
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253 | cr.energy0 = energy;
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254 | cr.energy = cr.energy0;
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255 | setGenotype({"cr" : cr, "parent_user1" : parent_user1, "parent_user2" : parent_user2, "opt" : 1});
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256 | placeRandomlyNotColliding(cr);
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257 | }
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