1 | // This file is a part of Framsticks SDK. http://www.framsticks.com/ |
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2 | // Copyright (C) 1999-2020 Maciej Komosinski and Szymon Ulatowski. |
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3 | // See LICENSE.txt for details. |
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4 | |
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5 | #include "genoobj.h" |
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6 | #include <frams/util/extvalue.h> |
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7 | #include <frams/model/autoname.h> |
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8 | #include "collectionobj.h" |
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9 | |
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10 | #define FIELDSTRUCT GenoObj |
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11 | ParamEntry geno_paramtab[] = |
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12 | { |
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13 | { "Geno", 1, 16, "Geno", "All information about a single genotype.\nThis is a genetics-only object which does not contain any performance data. See also: Genotype class" }, |
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14 | { "name", 0, PARAM_NOSTATIC, "Name", "s 0 40", GETSET(name), }, |
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15 | { "rawgenotype", 0, PARAM_NOSTATIC | PARAM_READONLY, "Raw genotype", "s 1", GETONLY(genotype), "Genotype, excluding the format specifier" }, |
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16 | { "info", 0, PARAM_NOSTATIC, "Info", "s 1", GETSET(info), "Additional information or comments", }, |
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17 | { "format", 0, PARAM_NOSTATIC | PARAM_READONLY, "Format", "s", GETONLY(format), "Genotype format", }, |
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18 | { "genotype", 0, PARAM_NOSTATIC | PARAM_READONLY, "Genotype", "s 1", GETONLY(string), "Genes as a string of characters", }, |
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19 | { "isValid", 0, PARAM_NOSTATIC | PARAM_READONLY | PARAM_DEPRECATED, "Valid", "d 0 1", GETONLY(isvalid), "Use 'is_valid' instead of 'isValid'." }, |
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20 | { "is_valid", 0, PARAM_NOSTATIC, "Validity", "d -1 1 -1", GETSET(isvalid), |
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21 | "0 = invalid genotype\n" |
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22 | "1 = valid genotype\n" |
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23 | "-1 = validity is not known. This is a transient state. The value of \"is_valid\" will never be -1 when read. It is safe to treat is_valid as boolean in statements like \"if (g.is_valid) ...\". Setting \"is_valid=-1\" will make it 0 or 1 again. This third state (-1) is only needed for loading Genotype objects from files where the \"is_valid\" field might not be present." |
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24 | }, |
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25 | { "getConverted", 0, PARAM_NOSTATIC, "Get converted genotype", "p oGeno(s format)", PROCEDURE(p_getconvert), }, |
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26 | { "getConvertedWithCheckpoints", 0, PARAM_NOSTATIC, "Get converted genotype", "p oGeno(s format)", PROCEDURE(p_getconvert_ch), "See also Model.newWithCheckpoints()" }, |
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27 | { "f0genotype", 0, PARAM_NOSTATIC | PARAM_READONLY, "f0 genotype", "s 1", GETONLY(f0genotype), "converted to f0 genotype", }, |
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28 | { "new", 0, 0, "create new empty object", "p oGeno()", PROCEDURE(p_new), }, |
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29 | { "newFromString", 0, 0, "create new object from supplied string argument", "p oGeno(s genotype)", PROCEDURE(p_newfromstring), }, |
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30 | { "newFrom", 0, 0, "create new object", "p oGeno(s genotype,s format,s name,s description)", PROCEDURE(p_newfrom), }, |
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31 | { "autoname", 0, PARAM_NOSTATIC | PARAM_READONLY, "Autogenerated name", "s", GETONLY(autoname), }, |
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32 | { "toVector", 0, PARAM_READONLY | PARAM_NOSTATIC, "serialization support", "oVector", GETONLY(toVector), }, |
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33 | { "newFromVector", 0, 0, "serialization support", "p oGeno(oVector)", PROCEDURE(p_newfromvector), }, |
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34 | { 0, 0, 0, }, |
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35 | }; |
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36 | #undef FIELDSTRUCT |
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37 | |
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38 | void GenoObj::get_isvalid(ExtValue *ret) |
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39 | { |
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40 | ret->setInt(isValid()); |
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41 | } |
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42 | |
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43 | int GenoObj::set_isvalid(const ExtValue *v) |
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44 | { |
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45 | paInt n = v->getInt(); |
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46 | if (getValid() != n) |
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47 | { |
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48 | setValid(n); |
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49 | return PSET_CHANGED; |
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50 | } |
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51 | return 0; |
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52 | } |
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53 | |
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54 | void GenoObj::get_genotype(ExtValue *ret) |
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55 | { |
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56 | ret->setString(getGenes()); |
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57 | } |
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58 | |
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59 | void GenoObj::get_name(ExtValue *ret) |
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60 | { |
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61 | ret->setString(getName()); |
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62 | } |
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63 | |
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64 | void GenoObj::get_autoname(ExtValue *ret) |
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65 | { |
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66 | Model m(*this, Model::SHAPE_UNKNOWN); |
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67 | ret->setString(AutoName::makeName(m)); |
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68 | } |
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69 | |
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70 | int GenoObj::set_name(const ExtValue *v) |
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71 | { |
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72 | setName(v->getString()); |
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73 | return PSET_CHANGED; |
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74 | } |
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75 | |
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76 | void GenoObj::get_info(ExtValue *ret) |
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77 | { |
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78 | ret->setString(getComment()); |
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79 | } |
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80 | |
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81 | void GenoObj::get_string(ExtValue *ret) |
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82 | { |
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83 | ret->setString(getGenesAndFormat()); |
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84 | } |
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85 | |
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86 | void GenoObj::get_format(ExtValue *ret) |
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87 | { |
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88 | ret->setString(getFormat()); |
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89 | } |
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90 | |
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91 | int GenoObj::set_info(const ExtValue *v) |
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92 | { |
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93 | setComment(v->getString()); |
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94 | return PSET_CHANGED; |
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95 | } |
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96 | |
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97 | void GenoObj::get_f0genotype(ExtValue *ret) |
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98 | { |
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99 | ret->setString(getConverted(Geno::F0_FORMAT_LIST).getGenes()); |
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100 | } |
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101 | |
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102 | SString GenoObj::formatFromExtValue(ExtValue& v) |
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103 | { |
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104 | if (v.getType() == TInt) |
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105 | { |
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106 | char ch = v.getInt(); |
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107 | return SString(&ch, 1); |
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108 | } |
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109 | if (v.getType() == TString) |
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110 | { |
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111 | return v.getString(); |
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112 | } |
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113 | return Geno::INVALID_FORMAT; |
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114 | } |
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115 | |
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116 | void GenoObj::p_getconvert(ExtValue *args, ExtValue *ret) |
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117 | { |
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118 | *ret = makeDynamicObjectAndDecRef(new Geno(getConverted(formatFromExtValue(args[0])))); |
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119 | } |
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120 | |
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121 | void GenoObj::p_getconvert_ch(ExtValue *args, ExtValue *ret) |
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122 | { |
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123 | *ret = makeDynamicObjectAndDecRef(new Geno(getConverted(formatFromExtValue(args[0]), NULL, true))); |
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124 | } |
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125 | |
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126 | void GenoObj::p_new(ExtValue *args, ExtValue *ret) |
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127 | { |
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128 | *ret = makeDynamicObjectAndDecRef(new Geno()); |
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129 | } |
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130 | |
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131 | void GenoObj::p_newfromstring(ExtValue *args, ExtValue *ret) |
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132 | { |
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133 | *ret = makeDynamicObjectAndDecRef(new Geno(args[0].getString())); |
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134 | } |
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135 | |
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136 | void GenoObj::p_newfrom(ExtValue *args, ExtValue *ret) |
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137 | { |
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138 | *ret = makeDynamicObjectAndDecRef(new Geno(args[3].getString(), formatFromExtValue(args[2]), |
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139 | args[1].getString(), args[0].getString())); |
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140 | } |
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141 | |
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142 | Param& GenoObj::getStaticParam() |
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143 | { |
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144 | #ifdef __CODEGUARD__ |
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145 | static GenoObj static_genoobj; |
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146 | static Param static_genoparam(geno_paramtab, &static_genoobj); |
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147 | #else |
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148 | static Param static_genoparam(geno_paramtab); |
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149 | #endif |
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150 | return static_genoparam; |
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151 | } |
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152 | |
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153 | Param& GenoObj::getDynamicParam() |
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154 | { |
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155 | static Param dynamic_genoparam(geno_paramtab); |
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156 | return dynamic_genoparam; |
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157 | } |
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158 | |
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159 | ParamInterface* GenoObj::getInterface() { return &getStaticParam(); } |
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160 | |
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161 | ExtObject GenoObj::makeStaticObject(Geno* g) |
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162 | { |
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163 | return ExtObject(&getStaticParam(), (void*)g); |
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164 | } |
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165 | |
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166 | ExtObject GenoObj::makeDynamicObject(Geno* g) |
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167 | { |
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168 | return ExtObject(&getDynamicParam(), (DestrBase*)g); |
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169 | } |
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170 | |
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171 | ExtObject GenoObj::makeDynamicObjectAndDecRef(Geno* g) |
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172 | { |
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173 | const ExtObject& o = makeDynamicObject(g); |
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174 | g->decref(); |
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175 | return o; |
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176 | } |
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177 | |
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178 | Geno* GenoObj::fromObject(const ExtValue& v, bool warn) |
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179 | { |
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180 | return (Geno*)v.getObjectTarget(getStaticParam().getName(), warn); |
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181 | } |
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182 | |
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183 | void GenoObj::get_toVector(ExtValue *ret) |
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184 | { |
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185 | VectorObject *vec = new VectorObject; |
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186 | vec->data += new ExtValue(getGenesAndFormat()); |
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187 | vec->data += new ExtValue(getName()); |
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188 | vec->data += new ExtValue(getComment()); |
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189 | ret->setObject(ExtObject(&VectorObject::par, vec)); |
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190 | } |
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191 | |
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192 | void GenoObj::p_newfromvector(ExtValue *args, ExtValue *ret) |
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193 | { |
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194 | VectorObject *vec = VectorObject::fromObject(args->getObject()); |
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195 | if (vec && (vec->data.size() >= 3)) |
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196 | { |
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197 | SString g = vec->get(0) ? vec->get(0)->getString() : SString::empty(); |
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198 | SString n = vec->get(1) ? vec->get(1)->getString() : SString::empty(); |
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199 | SString c = vec->get(2) ? vec->get(2)->getString() : SString::empty(); |
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200 | *ret = makeDynamicObjectAndDecRef(new Geno(g, Geno::UNKNOWN_FORMAT, n, c)); |
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201 | } |
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202 | else |
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203 | ret->setEmpty(); |
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204 | } |
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205 | |
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206 | ///////////// |
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207 | |
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208 | REGISTER_DESERIALIZABLE(GenoObj) |
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