1 | // This file is a part of Framsticks SDK. http://www.framsticks.com/ |
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2 | // Copyright (C) 1999-2015 Maciej Komosinski and Szymon Ulatowski. |
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3 | // See LICENSE.txt for details. |
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4 | |
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5 | #ifndef _MULTIMAP_H_ |
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6 | #define _MULTIMAP_H_ |
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7 | |
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8 | #include "multirange.h" |
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9 | |
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10 | class SingleMapping |
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11 | { |
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12 | public: |
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13 | SingleMapping(int b,const MultiRange& t):begin(b),to(t) {} |
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14 | SingleMapping(int b):begin(b) {} |
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15 | SingleMapping(const SingleMapping& sm):begin(sm.begin),to(sm.to) {} |
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16 | int begin; |
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17 | MultiRange to; |
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18 | }; |
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19 | |
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20 | /** MultiMap - used for conversion mapping. |
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21 | Read about how mappings work: http://www.framsticks.com/files/common/GeneticMappingsInArtificialGenomes.pdf |
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22 | see @ref convmap |
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23 | */ |
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24 | class MultiMap |
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25 | { |
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26 | /** list of (SingleMapping*) */ |
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27 | SList data; |
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28 | |
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29 | SingleMapping* getData(int i) const {return (SingleMapping*)data(i);} |
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30 | void addData(int i,SingleMapping* mapping) {data.insert(i,(void*)mapping);} |
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31 | void removeData(int i) {data.remove(i);} |
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32 | int findData(int x) const; |
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33 | int getBegin(int i) const {return getData(i)->begin;} |
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34 | |
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35 | // addRangeXXX return the shift for range numbers > r |
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36 | int addRange(int &r,const MultiRange& mr); |
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37 | // value of 'r' is adjusted according to its range number change |
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38 | int addRangeBeginEnd(int &r,int begin,int end,const MultiRange& mr); |
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39 | |
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40 | public: |
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41 | MultiMap() {} |
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42 | MultiMap(const MultiMap& mm) {operator=(mm);} |
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43 | ~MultiMap(); |
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44 | void operator=(const MultiMap& mm); |
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45 | |
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46 | void clear(); |
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47 | int isEmpty() const {return data.size()==0;} |
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48 | int mappingCount() const {return data.size();} |
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49 | SingleMapping* getMapping(int i) const {return (SingleMapping*)getData(i);} |
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50 | int findMappingId(int x) const {return findData(x);} |
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51 | int rangeCount() const {return isEmpty()?0:data.size()-1;} |
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52 | IRange getRange(int i) const; |
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53 | |
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54 | int getBegin() const; |
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55 | int getEnd() const; |
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56 | |
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57 | void add(const IRange& from,const IRange& to) {add(from.begin, from.end, MultiRange(to));} |
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58 | void add(const IRange& from,const MultiRange& to) {add(from.begin, from.end, to);} |
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59 | void add(int from1,int from2,int to1,int to2) {add(from1,from2,MultiRange(to1,to2));} |
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60 | void add(int from1,int from2,const MultiRange& to); |
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61 | void add(const MultiRange& from,const MultiRange& to); |
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62 | void add(const MultiMap& mm); |
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63 | void addCombined(const MultiMap& m1,const MultiMap& m2); |
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64 | void addReversed(const MultiMap& mm); |
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65 | |
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66 | const MultiRange& map(int x) const; |
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67 | MultiRange map(int begin,int end) const; |
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68 | MultiRange map(const IRange& range) const {return map(range.begin, range.end);} |
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69 | MultiRange map(const MultiRange& ranges) const; |
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70 | |
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71 | void print() const; |
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72 | void print2() const; |
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73 | }; |
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74 | |
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75 | #endif |
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