source: cpp/frams/genetics/genman.cpp @ 138

Last change on this file since 138 was 138, checked in by sz, 11 years ago

genetic operator example - frams/_demos/genooper_test.cpp
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1// This file is a part of the Framsticks GDK.
2// Copyright (C) 2002-2014  Maciej Komosinski and Szymon Ulatowski.  See LICENSE.txt for details.
3// Refer to http://www.framsticks.com/ for further information.
4
5#include "genman.h"
6#include <frams/vm/classes/genoobj.h>
7#include GEN_CONFIG_FILE //configuration of active genetic operators
8#include "common/framsg.h"
9#include "common/nonstd_math.h"
10#include <frams/errmgr/errmanager.h>
11
12
13#ifdef USE_GENMAN_F0
14#include "f0/oper_f0.h"
15#endif
16#ifdef USE_GENMAN_F0FUZZY
17#include "f0/oper_f0Fuzzy.h"
18#endif
19#ifdef USE_GENMAN_F1
20#include "f1/oper_f1.h"
21#endif
22#ifdef USE_GENMAN_F2
23#include "f2/oper_f2.h"
24#endif
25#ifdef USE_GENMAN_F2
26#include "f3/oper_f3.h"
27#endif
28#ifdef USE_GENMAN_F4
29#include "f4/oper_f4.h"
30#endif
31#ifdef USE_GENMAN_F5
32#include "f5/oper_f5.h"
33#endif
34#ifdef USE_GENMAN_F6
35#include "f6/oper_f6.h"
36#endif
37#ifdef USE_GENMAN_F7
38#include "f7/oper_f7.h"
39#endif
40#ifdef USE_GENMAN_F8
41#include "f8/oper_f8.h"
42#endif
43#ifdef USE_GENMAN_F9
44#include "f9/oper_f9.h"
45#endif
46
47using namespace std; //string, vector
48
49//old code needs update:
50//#include "gengroups.h"
51//extern GenGroup *listaGen;
52//   GENGROUP(0)->l_del.add(sim->GM.onDelGen,&sim->GM); //before delete
53//   GENGROUP(0)->l_del.remove(sim->GM.onDelGen,&sim->GM); //before delete
54
55
56#define FIELDSTRUCT GenMan
57
58static ParamEntry GMparam_tab[] =
59{
60        { "Genetics", 1, 10, "GenMan", },
61        { "gen_hist", 0, PARAM_DONTSAVE, "Remember history of genetic operations", "d 0 1 0", FIELD(history), "Required for phylogenetic analysis", },
62        { "gen_hilite", 0, 0, "Use syntax highlighting", "d 0 1 1", FIELD(hilite), "Use colors for genes?\n(slows down viewing/editing of huge genotypes)", },
63        { "gen_extmutinfo", 0, 0, "Extended mutation info", "d 0 2 0 ~Off~Method ID~Method description", FIELD(extmutinfo), "If active, information about employed mutation method will be stored in the 'info' field of each mutated genotype.", },
64        { "operReport", 0, PARAM_DONTSAVE, "Operators report", "p()", PROCEDURE(p_report), "Show available genetic operators", },
65        { "toHTML", 0, PARAM_DONTSAVE, "HTMLize a genotype", "p s(s)", PROCEDURE(p_htmlize), "returns genotype expressed as colored HTML", },
66        { "toHTMLshort", 0, PARAM_DONTSAVE, "HTMLize a genotype, shorten if needed", "p s(s)", PROCEDURE(p_htmlizeshort), "returns genotype (abbreviated if needed) expressed as colored HTML", },
67        { "validate", 0, PARAM_DONTSAVE + PARAM_USERHIDDEN, "Validate", "p oGeno(oGeno)", PROCEDURE(p_validate), "returns validated (if possible) Geno object from supplied Geno", },
68        { "mutate", 0, PARAM_DONTSAVE + PARAM_USERHIDDEN, "Mutate", "p oGeno(oGeno)", PROCEDURE(p_mutate), "returns mutated Geno object from supplied Geno", },
69        { "crossOver", 0, PARAM_DONTSAVE + PARAM_USERHIDDEN, "Crossover", "p oGeno(oGeno,oGeno)", PROCEDURE(p_crossover), "returns crossed over genotype", },
70        { "getSimplest", 0, PARAM_DONTSAVE + PARAM_USERHIDDEN, "Get simplest genotype", "p oGeno(d format)", PROCEDURE(p_getsimplest), "returns the simplest genotype for a given encoding (format). 0 means f0, 4 means f4, etc.", },
71        { 0, },
72};
73
74static ParamEntry GMstats_tab[] =
75{
76        { "Genetics", 1, 12, "GenManStats", "Statistics for genetic operations." },
77        { "gen_count", 0, PARAM_READONLY, "Number of genetic operations so far", "d", FIELD(count), "", },
78        { "gen_mvalid", 0, PARAM_READONLY, "Mutations valid", "d", FIELD(valid_m), "", },
79        { "gen_mvalidated", 0, PARAM_READONLY, "Mutations validated", "d", FIELD(validated_m), "", },
80        { "gen_minvalid", 0, PARAM_READONLY, "Mutations invalid", "d", FIELD(invalid_m), "couldn't be repaired", },
81        { "gen_mfailed", 0, PARAM_READONLY, "Mutations failed", "d", FIELD(failed_m), "couldn't be performed", },
82        { "gen_xovalid", 0, PARAM_READONLY, "Crossovers valid", "d", FIELD(valid_xo), "", },
83        { "gen_xovalidated", 0, PARAM_READONLY, "Crossovers validated", "d", FIELD(validated_xo), "", },
84        { "gen_xoinvalid", 0, PARAM_READONLY, "Crossovers invalid", "d", FIELD(invalid_xo), "couldn't be repaired", },
85        { "gen_xofailed", 0, PARAM_READONLY, "Crossovers failed", "d", FIELD(failed_xo), "couldn't be performed", },
86        { "gen_mutimpr", 0, PARAM_READONLY, "Mutations total effect", "f", FIELD(mutchg), "total cumulative mutation change", },
87        { "gen_xoimpr", 0, PARAM_READONLY, "Crossovers total effect", "f", FIELD(xochg), "total cumulative crossover change", },
88        { "clrstats", 0, PARAM_DONTSAVE, "Clear stats and history", "p()", PROCEDURE(p_clearStats), "", },
89        { 0, },
90};
91
92#undef FIELDSTRUCT
93
94GenMan::GenMan() : localpar(GMparam_tab, this), localstats(GMstats_tab, this),
95seloperpar("GenOperators", "Genetics: Active operators"),
96par("GenMan", "Manages various genetic operations, using appropriate operators for the argument genotype format."),
97neuronsparam("Genetics: Neurons to add", "neuronsAdd", "neuadd_")
98{
99        history = 0;
100        hilite = 1;
101        clearStats();
102
103#ifdef USE_GENMAN_F0
104        geno_fx_list.push_back(new Geno_f0);
105#endif
106#ifdef USE_GENMAN_F0FUZZY
107        geno_fx_list.push_back(new Geno_f0Fuzzy);
108#endif
109#ifdef USE_GENMAN_F1
110        geno_fx_list.push_back(new Geno_f1);
111#endif
112#ifdef USE_GENMAN_F2
113        geno_fx_list.push_back(new Geno_f2);
114#endif
115#ifdef USE_GENMAN_F3
116        geno_fx_list.push_back(new Geno_f3);
117#endif
118#ifdef USE_GENMAN_F4
119        geno_fx_list.push_back(new Geno_f4);
120#endif
121#ifdef USE_GENMAN_F5
122        geno_fx_list.push_back(new Geno_f5);
123#endif
124#ifdef USE_GENMAN_F6
125        geno_fx_list.push_back(new Geno_f6);
126#endif
127#ifdef USE_GENMAN_F7
128        geno_fx_list.push_back(new Geno_f7);
129#endif
130#ifdef USE_GENMAN_F8
131        geno_fx_list.push_back(new Geno_f8);
132#endif
133#ifdef USE_GENMAN_F9
134        geno_fx_list.push_back(new GenoOper_f9);
135#endif
136
137        seloper = new int[geno_fx_list.size()]; //may result in a little overhead if some of the operators on the geno_fx_list concern the same genetic format
138        int selopercount = 0;
139        for (unsigned int i = 0; i < geno_fx_list.size(); i++)
140        {
141                if (operformats.find(geno_fx_list[i]->supported_format) != -1) continue;
142                char tmp[10];
143                SString id, name, type = "~";
144                type += geno_fx_list[i]->name;
145                int dup = 0;
146                for (unsigned int j = i + 1; j < geno_fx_list.size(); j++)
147                        if (geno_fx_list[i]->supported_format == geno_fx_list[j]->supported_format)
148                        {
149                                type += "~"; type += geno_fx_list[j]->name; dup++;
150                        }
151                sprintf(tmp, "d 0 %d ", dup);
152                type = SString(tmp) + type;
153                sprintf(tmp, "%c", geno_fx_list[i]->supported_format);
154                id = "genoper_f"; id += tmp;
155                name = "Operators for f"; name += tmp;
156                seloper[selopercount] = 0;
157                operformats += geno_fx_list[i]->supported_format;
158                //printf("%x %s %s %s\n",&seloper[selopercount],(const char*)id,(const char*)type,(const char*)name);
159                seloperpar.addProperty(&seloper[selopercount++], id, type, name, "", PARAM_READONLY*(dup == 0));
160        }
161
162        par += &localpar;
163        par += &seloperpar;
164        par += &neuronsparam;
165        for (unsigned int i = 0; i < geno_fx_list.size(); i++)
166                if (geno_fx_list[i]->par.getParamTab()) par += &geno_fx_list[i]->par;
167}
168
169GenMan::~GenMan()
170{
171        for (unsigned int i = 0; i < geno_fx_list.size(); i++) delete geno_fx_list[i];
172        delete[] seloper;
173}
174
175void GenMan::setDefaults()
176{
177        for (unsigned int i = 0; i < geno_fx_list.size(); i++)
178        {
179                geno_fx_list[i]->par.setDefault();
180                geno_fx_list[i]->setDefaults();
181        }
182        localpar.setDefault();
183        //...and we do not reset others that are linked to 'par',
184        //because there quite a few of them, and not every of them defines defaults for each of its parameters.
185}
186
187int GenMan::testValidity(Geno &g, bool &canvalidate)
188{
189        const char *gg = g.getGene();
190        GenoOperators *gf = getGeno_f(g.getFormat());
191        int check1;
192        if (!gf) { canvalidate = false; return GENOPER_NOOPER; }
193        else check1 = gf->checkValidity(gg);
194        if (!canvalidate) return check1; //just checking
195        if (check1 == GENOPER_OK) { canvalidate = false; return check1; }
196        char *g2 = strdup(gg);
197        if (gf->validate(g2) == GENOPER_NOOPER) { free(g2); canvalidate = false; return check1; }
198        if (check1 == GENOPER_NOOPER) //disaster: cannot check because there is no check operator
199        {
200                g.setGene(g2); free(g2); canvalidate = false; return GENOPER_NOOPER;
201        }
202        int check2 = gf->checkValidity(g2);
203        if (check2 == GENOPER_OK) g.setGene(g2);
204        free(g2);
205        if (check2 == GENOPER_OK) return check1;
206        canvalidate = false;
207        return check1; //could not validate.
208}
209
210int GenMan::testGenoValidity(Geno& g)
211{
212        bool fix = false;
213        switch (testValidity(g, fix))
214        {
215        case GENOPER_OK: return 1;
216        case GENOPER_NOOPER: return -1;
217        default: return 0;
218        }
219}
220
221Geno GenMan::Validate(const Geno& geny)
222{
223        char format=geny.getFormat();
224        GenoOperators *gf=getGeno_f(format);
225        if (gf==NULL)
226                return Geno(SString::empty(),-1,SString::empty(),SString::sprintf("GENOPER_NOOPER: Validate(): don't know how to handle genetic format %c",format));
227        char *g2=strdup(geny.getGene()); //copy for validation
228        int res=gf->validate(g2);
229        SString sg2=g2;
230        free(g2);
231        if (res==GENOPER_OK)
232                return Geno(sg2,format,geny.getName(),geny.getComment());
233        else
234                return Geno(SString::empty(),-1,SString::empty(),SString::sprintf("GENOPER_NOOPER: validate() for format %c returned invalid value",format));
235}
236
237Geno GenMan::Mutate(const Geno& g)
238{
239        float chg; //how many changes
240        int method; //mutation method
241        char format=g.getFormat();
242        GenoOperators *gf=getGeno_f(format);
243        if (gf==NULL)
244                return Geno(SString::empty(),-1,SString::empty(),SString::sprintf("GENOPER_NOOPER: Mutate(): don't know how to handle genetic format %c",format));
245        Geno gv=g;
246        bool canvalidate=true;
247        if (testValidity(gv,canvalidate)>0 && canvalidate==false)
248                return Geno("",-1,"","GENOPER_OPFAIL: Mutate(): cannot validate invalid source genotype");
249        bool ok=false;
250        int pcount=count;
251        while (!ok)
252        {
253                char *gn=strdup(gv.getGene()); //copy for mutation
254                chg=0;
255                if (gf->mutate(gn,chg,method)==GENOPER_OK)
256                {
257                        ErrorHandler eh(ErrorHandler::StoreFirstMessage); //mute testValidity()
258                        Geno G(gn,gv.getFormat(),"","");
259                        canvalidate=true;
260                        int res=testValidity(G,canvalidate);
261                        if (res==GENOPER_OK && canvalidate==false) {valid_m++; ok=true;} else
262                                if (res>0 && canvalidate==false) invalid_m++; else
263                                {validated_m++; ok=true;}
264                                if (ok) gv=G;
265                } else failed_m++;
266                free(gn);
267                count++;
268                if (!ok && (count-pcount>100))
269                {
270                        FMprintf("GenMan","Mutate",2,"Tried 100x and failed: %s",(const char*)g.getGene());
271                        return Geno("",-1,"","GENOPER_OPFAIL: Mutate() tried 100x and failed");
272                }
273        }
274        mutchg+=chg;
275        if (history) saveLink((const char*)g.getGene(),(const char*)gv.getGene(),chg);
276        SString mutinfo;
277        if (extmutinfo == 0) mutinfo = SString::sprintf("%.2f%% mutation of '%s'",100*chg,(const char*)g.getName()); else
278                if (extmutinfo == 1) mutinfo = SString::sprintf("%.2f%% mutation(%d) of '%s'", 100 * chg, method, (const char*)g.getName()); else
279                        mutinfo = SString::sprintf("%.2f%% mutation(%s) of '%s'", 100 * chg, gf->mutation_method_names ? gf->mutation_method_names[method] : "unspecified method name", (const char*)g.getName());
280        gv.setComment(mutinfo);
281        return gv;
282}
283
284Geno GenMan::CrossOver(const Geno& g1, const Geno& g2)
285{
286        char format = g1.getFormat();
287        if (format != g2.getFormat()) return Geno(SString::empty(), -1, SString::empty(), SString::sprintf("GENOPER_NOOPER: CrossOver() does not know how to handle parents with differing genetic formats (%c and %c)", format, g2.getFormat()));
288        GenoOperators *gf = getGeno_f(format);
289        if (gf == NULL)
290                return Geno(SString::empty(), -1, SString::empty(), SString::sprintf("GENOPER_NOOPER: CrossOver(): don't know how to handle genetic format %c", format));
291        Geno g1v = g1, g2v = g2;
292
293        {
294                ErrorHandler eh(ErrorHandler::StoreFirstMessage); //mute testValidity()
295                bool canvalidate = true;
296                if (testValidity(g1v, canvalidate) > 0 && canvalidate == false)
297                        return Geno("", -1, "", "GENOPER_OPFAIL: CrossOver(): cannot validate invalid source genotype #1");
298                canvalidate = true;
299                if (testValidity(g2v, canvalidate) > 0 && canvalidate == false)
300                        return Geno("", -1, "", "GENOPER_OPFAIL: CrossOver(): cannot validate invalid source genotype #2");
301        }
302
303        float chg;
304        bool ok = false;
305        int pcount = count;
306
307        while (!ok)
308        {
309                float chg1, chg2;
310                char *g1n = strdup(g1.getGene()); //copy for crossover
311                char *g2n = strdup(g2.getGene()); //copy for crossover
312                chg1 = chg2 = 0;
313                if (gf->crossOver(g1n, g2n, chg1, chg2) == GENOPER_OK)
314                {
315                        char *gn;
316                        if (g1n[0] && g2n[0]) if (randomN(2) == 0) g1n[0] = 0; else g2n[0] = 0; //we want only one
317                        if (g1n[0]) { gn = g1n; chg = chg1; }
318                        else { gn = g2n; chg = chg2; }
319                        ErrorHandler eh(ErrorHandler::StoreFirstMessage); //mute testValidity()
320                        Geno G(gn, g1v.getFormat(), "", "");
321                        bool canvalidate = true;
322                        int res = testValidity(G, canvalidate);
323                        if (res == GENOPER_OK && canvalidate == false) { valid_xo++; ok = true; }
324                        else
325                                if (res > 0 && canvalidate == false) invalid_xo++; else
326                                {
327                                        validated_xo++; ok = true;
328                                }
329                        if (ok) g1v = G;
330                }
331                else failed_xo++;
332                free(g1n);
333                free(g2n);
334                count++;
335                if (!ok && (count - pcount > 100))
336                {
337                        FMprintf("GenMan", "CrossOver", 2, "Tried 100x and failed: %s and %s", (const char*)g1.getGene(), (const char*)g2.getGene());
338                        return Geno("", -1, "", "GENOPER_OPFAIL: CrossOver() tried 100x and failed");
339                }
340        }
341        // result in g1v
342        xochg += chg;
343        if (history) saveLink((const char*)g1.getGene(), (const char*)g1v.getGene(), chg);
344        SString xoinfo = SString::sprintf("Crossing over of '%s' (%.2f%%) and '%s' (%.2f%%)",
345                (const char*)g1.getName(), 100 * chg, (const char*)g2.getName(), 100 * (1 - chg));
346        g1v.setComment(xoinfo);
347        return g1v;
348}
349
350float GenMan::Similarity(const Geno& g1, const Geno& g2)
351{
352        char format = g1.getFormat();
353        if (format != g2.getFormat()) return GENOPER_NOOPER;
354        GenoOperators *gf = getGeno_f(format);
355        if (!gf) return GENOPER_NOOPER; else return gf->similarity(g1.getGene(), g2.getGene());
356}
357
358unsigned long GenMan::Style(const char *g, int pos)
359{
360        Geno G(g);
361        if ((pos = G.mapStringToGen(pos)) == -1) return GENSTYLE_COMMENT;
362        GenoOperators *gf = getGeno_f(G.getFormat());
363        if (!gf) return GENSTYLE_CS(0, 0); //black & valid
364        else return gf->style(G.getGene(), pos);
365}
366
367void GenMan::GetFullStyle(const char *g, unsigned long *styletab)
368{
369        Geno G(g);
370        GenoOperators *gf = getGeno_f(G.getFormat());
371        SString geny = G.getGene();
372        for (unsigned int pos = 0; pos < strlen(g); pos++)
373        {
374                int posmapped = G.mapStringToGen(pos);
375                if (posmapped == -1) styletab[pos] = GENSTYLE_COMMENT;
376                else if (!gf) styletab[pos] = GENSTYLE_CS(0, 0); //black & valid
377                else styletab[pos] = gf->style(geny, posmapped);
378        }
379}
380
381SString GenMan::HTMLize(const char *g) { return HTMLize(g, false); }
382
383SString GenMan::HTMLizeShort(const char *g) { return HTMLize(g, true); }
384
385SString GenMan::HTMLize(const char *g, bool shorten)
386{
387        char buf[50];
388        int len = strlen(g);
389        int chars = 0, lines = 0;
390        bool shortened = false;
391        unsigned long *styletab = new unsigned long[len];
392        GetFullStyle(g, styletab);
393        SString html = "\n<div style=\"background:white;padding:0.2em;font-family:arial,helvetica,sans-serif;font-size:90%\">";
394        unsigned long prevstyle, prevcolor, style = 0, color = 0;
395        for (int i = 0; i<len; i++)
396        {
397                if (shorten && ((lines == 0 && chars>160) || (lines > 5 || chars > 300))) { shortened = true; break; }
398                if (g[i] == '\r') continue;
399                if (g[i] == '\n') { html += "<br>\n"; lines++; continue; }
400                chars++;
401                prevstyle = style;
402                prevcolor = color;
403                style = GENGETSTYLE(styletab[i]);
404                color = GENGETCOLOR(styletab[i]);
405                if ((i != 0 && (color != prevcolor))) html += "</font>";
406                if ((style&GENSTYLE_INVALID) != (prevstyle&GENSTYLE_INVALID))
407                {
408                        html += "<"; if (!(style&GENSTYLE_INVALID)) html += "/"; html += "u>";
409                }
410                if ((style&GENSTYLE_BOLD) != (prevstyle&GENSTYLE_BOLD))
411                {
412                        html += "<"; if (!(style&GENSTYLE_BOLD)) html += "/"; html += "b>";
413                }
414                if ((style&GENSTYLE_ITALIC) != (prevstyle&GENSTYLE_ITALIC))
415                {
416                        html += "<"; if (!(style&GENSTYLE_ITALIC)) html += "/"; html += "i>";
417                }
418                if ((i == 0 || (color != prevcolor)))
419                {
420                        sprintf(buf, "<font color=#%02x%02x%02x>", GENGET_R(color), GENGET_G(color), GENGET_B(color)); html += buf;
421                }
422                if (g[i] == '<') html += "&lt;"; else if (g[i] == '>') html += "&gt;"; else html += g[i];
423                if ((i % 3) == 0 && g[i] == ' ') html += "\n"; //for readability, insert some newlines into html...
424        }
425        delete[] styletab;
426        html += "</u></b></i></font>";
427        if (shortened) html += " [etc...]";
428        html += "</div>\n";
429        return html;
430}
431
432void GenMan::p_htmlize(ExtValue *args, ExtValue *ret)
433{
434        ret->setString(HTMLize(args->getString()));
435}
436
437void GenMan::p_htmlizeshort(ExtValue *args, ExtValue *ret)
438{
439        ret->setString(HTMLizeShort(args->getString()));
440}
441
442Geno GenMan::GetSimplest(char format)
443{
444        GenoOperators *gf = getGeno_f(format);
445        if (!gf) return Geno();
446        SString info = "The simplest genotype of format f"; info += format;
447        info += " for operators '"; info += gf->name; info += "'.";
448        return Geno(gf->getSimplest(), format, "Root", (const char*)info);
449}
450
451void GenMan::p_getsimplest(ExtValue *args, ExtValue *ret)
452{
453        int format = args[0].getInt() + 48;
454        if (!getGeno_f(format))
455                ret->setEmpty();
456        else
457                *ret = GenoObj::makeDynamicObjectAndDecRef(new Geno(GetSimplest(format)));
458}
459
460const char *GenMan::GetOpName(char format)
461{
462        GenoOperators *gf = getGeno_f(format);
463        if (!gf) return "n/a"; else return gf->name;
464}
465
466GenoOperators* GenMan::getGeno_f(char format)
467{
468        int ind = operformats.find(format);
469        if (ind == -1) return NULL;
470        int ktoryopformatu = seloper[ind];
471        for (unsigned int i = 0; i < geno_fx_list.size(); i++)
472                if (geno_fx_list[i]->supported_format == format)
473                        if (ktoryopformatu == 0) return geno_fx_list[i]; else ktoryopformatu--;
474        return NULL; //should never happen
475}
476
477void GenMan::saveLink(string prz, string pot, float& chg)
478{
479        GenoLink l;
480        l.count = count;
481        l.g1 = prz;
482        l.g2 = pot;
483        l.chg = chg;
484        l.fit = 0; //temporarily. Will be set when the genotype dies
485        GenoLinkList.push_back(l);
486}
487
488void GenMan::onDelGen(void *obj, long n)
489{
490        //old code needs update:
491        //   ((SpeciesList*)obj)->przyDodaniu(i);
492        /* !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
493           GenMan *gm=(GenMan*)obj;
494           Genotype *gt=(Genotype*)(*listaGen)(n); //there is no more "listaGen"
495           string g=(const char*)gt->genotype.getGene();
496           float fit=gt->getFinalFitness();
497           for(int i=0;i<gm->GenoLinkList.size();i++) //find genotype
498           if (gm->GenoLinkList[i].g1==g) {gm->GenoLinkList[i].fit=fit; break;}
499           */
500}
501
502void GenMan::clearStats()
503{
504        count = 0;
505        valid_m = valid_xo = validated_m = validated_xo = invalid_m = invalid_xo = failed_m = failed_xo = 0;
506        mutchg = xochg = 0;
507        GenoLinkList.clear();
508}
509
510void GenMan::p_clearStats(ExtValue *args, ExtValue *ret) { clearStats(); }
511
512void GenMan::p_report(ExtValue *args, ExtValue *ret)
513{                      //should be updated to handle multiple operators for a single format
514        char *g, *g2;
515        float f; int m;
516        FramMessage("GenMan", "Report", "The following genetic operators are available:", 0);
517        for (unsigned int i = 0; i < geno_fx_list.size(); i++)
518        {
519                SString l;
520                if (geno_fx_list[i]->checkValidity("") != GENOPER_NOOPER) l += " checkValidity";
521                if (geno_fx_list[i]->getSimplest())
522                {
523                        g = strdup(geno_fx_list[i]->getSimplest());
524                        g2 = strdup(g);
525                        if (geno_fx_list[i]->validate(g) != GENOPER_NOOPER) l += " validate";
526                        if (geno_fx_list[i]->mutate(g, f, m) != GENOPER_NOOPER) l += " mutate";
527                        if (geno_fx_list[i]->crossOver(g, g2, f, f) != GENOPER_NOOPER) l += " crossover";
528                        l += " getSimplest";
529                        free(g); free(g2);
530                }
531                //      if (geno_fx_list[i]->similarity("","")!=GENOPER_NOOPER) l+=" similarity";
532                FMprintf("GenMan", "Report", 0, "format f%c (%s):%s",
533                        geno_fx_list[i]->supported_format, (const char*)geno_fx_list[i]->name, (const char*)l);
534        }
535}
536
537void GenMan::p_validate(ExtValue *args, ExtValue *ret)
538{
539        Geno *g = GenoObj::fromObject(args[0]);
540        if (g == NULL)
541                ret->setEmpty();
542        else
543                *ret = GenoObj::makeDynamicObjectAndDecRef(new Geno(Validate(*g)));
544}
545
546void GenMan::p_mutate(ExtValue *args, ExtValue *ret)
547{
548        Geno *g = GenoObj::fromObject(args[0]);
549        if (g == NULL)
550                ret->setEmpty();
551        else
552                *ret = GenoObj::makeDynamicObjectAndDecRef(new Geno(Mutate(*g)));
553}
554
555void GenMan::p_crossover(ExtValue *args, ExtValue *ret)
556{
557        Geno *g1 = GenoObj::fromObject(args[1]);
558        Geno *g2 = GenoObj::fromObject(args[0]);
559        if (g1 == NULL || g2 == NULL)
560                ret->setEmpty();
561        else
562                *ret = GenoObj::makeDynamicObjectAndDecRef(new Geno(CrossOver(*g1, *g2)));
563}
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