1 | // This file is a part of Framsticks SDK. http://www.framsticks.com/ |
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2 | // Copyright (C) 1999-2017 Maciej Komosinski and Szymon Ulatowski. |
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3 | // See LICENSE.txt for details. |
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4 | |
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5 | // Copyright (C) 1999,2000 Adam Rotaru-Varga (adam_rotaru@yahoo.com), GNU LGPL |
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6 | // Copyright (C) since 2001 Maciej Komosinski |
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7 | // 2018, Grzegorz Latosinski, added support for new API for neuron types and their properties |
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8 | |
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9 | #include "f4_oper.h" |
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10 | #include <frams/util/sstring.h> |
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11 | #include <common/log.h> |
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12 | |
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13 | #include <stdio.h> |
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14 | #include <stdlib.h> |
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15 | #include "common/nonstd_math.h" |
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16 | #include <string.h> |
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17 | |
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18 | |
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19 | const char *Geno_f4::all_modifiers = F14_MODIFIERS ","; //comma in f4 is handled the same way (simple node, F4_ADD_SIMP) as modifiers |
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20 | |
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21 | // codes that can be changed (apart from being added/deleted) |
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22 | #define MUT_CHAN_CODES "<[#" |
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23 | #define REP_MAXCOUNT 19 |
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24 | |
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25 | #define FIELDSTRUCT Geno_f4 |
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26 | |
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27 | static ParamEntry GENO4param_tab[] = |
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28 | { |
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29 | { "Genetics: f4", 1, F4_COUNT + F4_ADD_COUNT + 1, }, |
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30 | { "f4_mut_add", 0, 0, "Add node", "f 0 100 50", FIELD(prob[F4_ADD]), "mutation: probability of adding a node", }, |
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31 | { "f4_mut_add_div", 0, 0, "- add division", "f 0 100 20", FIELD(probadd[F4_ADD_DIV]), "add node mutation: probability of adding a division", }, |
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32 | { "f4_mut_add_conn", 0, 0, "- add connection", "f 0 100 15", FIELD(probadd[F4_ADD_CONN]), "add node mutation: probability of adding a neural connection", }, |
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33 | { "f4_mut_add_neupar", 0, 0, "- add neuron property", "f 0 100 5", FIELD(probadd[F4_ADD_NEUPAR]), "add node mutation: probability of adding a neuron property/modifier", }, |
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34 | { "f4_mut_add_rep", 0, 0, "- add repetition", "f 0 100 10", FIELD(probadd[F4_ADD_REP]), "add node mutation: probability of adding a repetition", }, |
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35 | { "f4_mut_add_simp", 0, 0, "- add simple node", "f 0 100 50", FIELD(probadd[F4_ADD_SIMP]), "add node mutation: probability of adding a random, simple gene", }, |
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36 | { "f4_mut_del", 0, 0, "Delete node", "f 0 100 20", FIELD(prob[F4_DEL]), "mutation: probability of deleting a node", }, |
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37 | { "f4_mut_mod", 0, 0, "Modify node", "f 0 100 30", FIELD(prob[F4_MOD]), "mutation: probability of changing a node", }, |
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38 | { "f4_mut_exmod", 1, 0, "Excluded modifiers", "s 0 30", FIELD(excluded_modifiers), "Modifiers that will not be added nor deleted during mutation\n(all: " F14_MODIFIERS ")", }, |
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39 | { 0, }, |
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40 | }; |
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41 | |
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42 | #undef FIELDSTRUCT |
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43 | |
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44 | |
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45 | Geno_f4::Geno_f4() |
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46 | { |
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47 | supported_format = '4'; |
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48 | par.setParamTab(GENO4param_tab); |
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49 | par.select(this); |
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50 | par.setDefault(); |
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51 | |
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52 | mutation_method_names = new const char*[F4_COUNT + F4_ADD_COUNT - 1]; |
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53 | int index = 0; |
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54 | mutation_method_names[index++] = "added division"; |
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55 | mutation_method_names[index++] = "added neural connection"; |
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56 | mutation_method_names[index++] = "added neuron property"; |
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57 | mutation_method_names[index++] = "added repetition gene"; |
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58 | mutation_method_names[index++] = "added a simple node"; |
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59 | mutation_method_names[index++] = "deleted a node"; |
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60 | mutation_method_names[index++] = "modified a node"; |
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61 | if (index != F4_COUNT + F4_ADD_COUNT - 1) logMessage("Geno_f4", "Constructor", 3, "Mutation names init error"); |
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62 | } |
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63 | |
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64 | void Geno_f4::setDefaults() |
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65 | { |
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66 | excluded_modifiers = F14_MODIFIERS_RARE F14_MODIFIERS_VISUAL; |
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67 | } |
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68 | |
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69 | int Geno_f4::ValidateRec(f4_node *geno, int retrycount) const |
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70 | { |
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71 | // ! the genotype is geno->child (not geno) ! |
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72 | // build from it with repair on |
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73 | |
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74 | f4_Cells cells(geno->child, 1); |
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75 | cells.simulate(); //we should simulate?! |
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76 | |
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77 | // errors not fixed: |
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78 | if (GENOPER_OPFAIL == cells.geterror()) |
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79 | { |
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80 | if (cells.geterrorpos() >= 0) return 1 + cells.geterrorpos(); |
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81 | return GENOPER_OPFAIL; |
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82 | } |
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83 | // errors can be fixed |
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84 | if (GENOPER_REPAIR == cells.geterror()) |
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85 | { |
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86 | cells.repairGeno(geno, 1); |
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87 | // note: geno might have been fixed |
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88 | // check again |
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89 | int res2 = GENOPER_OK; |
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90 | if (retrycount > 0) |
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91 | res2 = ValidateRec(geno, retrycount - 1); |
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92 | |
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93 | if (res2 == GENOPER_OK) return GENOPER_REPAIR; |
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94 | return res2; |
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95 | } |
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96 | // no errors: |
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97 | return GENOPER_OK; |
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98 | } |
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99 | |
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100 | |
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101 | int Geno_f4::validate(char *& geno, const char *genoname) |
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102 | { |
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103 | // convert geno to tree, then try to validate 20 times |
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104 | f4_node root; |
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105 | if (f4_processrec(geno, 0, &root) || root.childCount() != 1) return GENOPER_OK; // cannot repair |
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106 | if (ValidateRec(&root, 20) == GENOPER_REPAIR) // if repaired, make it back to string |
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107 | { |
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108 | geno[0] = 0; |
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109 | root.child->sprintAdj(geno); |
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110 | } |
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111 | return GENOPER_OK; |
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112 | } |
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113 | |
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114 | |
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115 | int Geno_f4::checkValidity(const char* geno, const char *genoname) |
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116 | { |
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117 | f4_node root; |
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118 | int res = f4_processrec(geno, 0, &root); |
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119 | if (res) return res; // errorpos, >0 |
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120 | if (root.childCount() != 1) return 1; //earlier: GENOPER_OPFAIL |
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121 | f4_Cells cells(root.child, 0); |
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122 | cells.simulate(); |
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123 | if (cells.geterror() == GENOPER_OPFAIL || cells.geterror() == GENOPER_REPAIR) |
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124 | { |
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125 | if (cells.geterrorpos() >= 0) return 1 + cells.geterrorpos(); |
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126 | else return 1; //earlier: GENOPER_OPFAIL; |
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127 | } |
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128 | else return GENOPER_OK; |
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129 | } |
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130 | |
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131 | |
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132 | int Geno_f4::MutateOne(f4_node *& g, int &method) const |
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133 | { |
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134 | // ! the genotype is g->child (not g) ! |
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135 | |
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136 | // do the mutation |
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137 | // pick a random node |
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138 | f4_node *n1 = g->child->randomNode(); |
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139 | vector<NeuroClass*> neulist; |
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140 | //DB( printf("%c\n", n1->name); ) |
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141 | int neuronid = -1; |
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142 | |
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143 | switch (roulette(prob, F4_COUNT)) |
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144 | { |
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145 | case F4_ADD: |
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146 | { |
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147 | // add a node |
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148 | switch (method = roulette(probadd, F4_ADD_COUNT)) |
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149 | { |
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150 | case F4_ADD_DIV: |
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151 | { |
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152 | // add division ('<') |
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153 | f4_node *n3 = n1->parent; |
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154 | n3->removeChild(n1); |
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155 | f4_node *n2 = new f4_node('<', n3, n3->pos); |
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156 | n2->addChild(n1); |
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157 | // new cell is stick or neuron |
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158 | // "X>" or "N>" |
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159 | f4_node *n5 = NULL; |
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160 | double pr = rnd01; |
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161 | pr -= 0.5; |
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162 | if (pr < 0) n5 = new f4_node('X', n2, n2->pos); |
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163 | else |
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164 | { |
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165 | // make neuron |
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166 | NeuroClass *rndclass = GenoOperators::getRandomNeuroClass(); |
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167 | if (rndclass == NULL) |
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168 | { |
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169 | n5 = new f4_node('X', n2, n2->pos); |
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170 | } |
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171 | else |
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172 | { |
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173 | f4_node *n4 = new f4_node(rndclass->getName().c_str(), n2, n2->pos); |
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174 | if (rndclass->getPreferredInputs() != 0) |
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175 | { |
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176 | neuronid = -1; |
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177 | for (int i = 0; i < g->count(); i++) |
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178 | { |
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179 | f4_node *gcur = g->ordNode(i); |
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180 | char* temp = (char*)gcur->name.c_str(); |
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181 | NeuroClass *neuclass = GenoOperators::parseNeuroClass(temp); |
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182 | if (neuclass != NULL) |
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183 | { |
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184 | neulist.push_back(neuclass); |
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185 | } |
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186 | if (g->ordNode(i) == n3) |
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187 | { |
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188 | neuronid = neulist.size() - 1; |
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189 | } |
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190 | } |
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191 | if (neuronid == -1) |
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192 | { |
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193 | return GENOPER_OPFAIL; |
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194 | } |
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195 | n5 = new f4_node('[', n4, n2->pos); |
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196 | linkNodeMakeRandom(n5, neuronid, neulist); |
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197 | } |
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198 | else { |
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199 | n5 = n4; |
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200 | } |
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201 | } |
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202 | } |
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203 | new f4_node('>', n5, n5->pos); |
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204 | n1->parent = n2; |
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205 | // now with 50% chance swap children |
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206 | if (randomN(2) == 0) |
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207 | { |
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208 | n3 = n2->child; |
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209 | n2->child = n2->child2; |
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210 | n2->child2 = n3; |
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211 | } |
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212 | } |
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213 | break; |
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214 | case F4_ADD_CONN: |
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215 | { |
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216 | // add link |
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217 | f4_node *par = n1->parent; |
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218 | char* temp = (char*)par->name.c_str(); |
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219 | NeuroClass *neuclass = GenoOperators::parseNeuroClass(temp); |
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220 | if (neuclass != NULL) |
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221 | { |
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222 | n1->parent->removeChild(n1); |
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223 | f4_node *n2 = new f4_node('[', n1->parent, n1->parent->pos); |
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224 | n2->addChild(n1); |
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225 | n1->parent = n2; |
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226 | neuronid = -1; |
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227 | for (int i = 0; i < g->count(); i++) |
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228 | { |
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229 | f4_node *gcur = g->ordNode(i); |
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230 | temp = (char*)gcur->name.c_str(); |
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231 | NeuroClass *neuclass = GenoOperators::parseNeuroClass(temp); |
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232 | if (neuclass != NULL) |
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233 | { |
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234 | neulist.push_back(neuclass); |
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235 | } |
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236 | if (gcur == par) |
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237 | { |
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238 | neuronid = neulist.size() - 1; |
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239 | } |
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240 | } |
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241 | if (neuronid == -1) |
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242 | { |
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243 | return GENOPER_OPFAIL; |
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244 | } |
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245 | linkNodeMakeRandom(n2, neuronid, neulist); |
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246 | } |
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247 | } |
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248 | break; |
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249 | case F4_ADD_NEUPAR: |
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250 | { |
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251 | // add neuron modifier |
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252 | n1->parent->removeChild(n1); |
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253 | f4_node *n2 = new f4_node(':', n1->parent, n1->parent->pos); |
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254 | nparNodeMakeRandom(n2); |
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255 | n2->addChild(n1); |
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256 | n1->parent = n2; |
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257 | } |
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258 | break; |
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259 | case F4_ADD_REP: |
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260 | { |
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261 | // add repetition ('#') |
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262 | // repeated code (left child) is the original, right child is empty, count is 2 |
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263 | f4_node *n3 = n1->parent; |
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264 | n3->removeChild(n1); |
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265 | f4_node *n2 = new f4_node('#', n3, n3->pos); |
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266 | n2->i1 = 2; |
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267 | n2->addChild(n1); |
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268 | new f4_node('>', n2, n2->pos); |
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269 | n1->parent = n2; |
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270 | } |
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271 | break; |
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272 | case F4_ADD_SIMP: |
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273 | { |
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274 | // add simple node |
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275 | // choose a simple node from ADD_SIMPLE_CODES |
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276 | n1->parent->removeChild(n1); |
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277 | //f4_node *n2 = new f4_node(ADD_SIMPLE_CODES[randomN(strlen(ADD_SIMPLE_CODES))], n1->parent, n1->parent->pos); |
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278 | int modifierid = GenoOperators::getRandomChar(all_modifiers, excluded_modifiers.c_str()); |
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279 | f4_node *n2 = new f4_node(all_modifiers[modifierid], n1->parent, n1->parent->pos); |
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280 | n2->addChild(n1); |
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281 | n1->parent = n2; |
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282 | } |
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283 | break; |
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284 | } |
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285 | } |
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286 | break; |
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287 | |
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288 | case F4_DEL: |
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289 | { |
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290 | method = F4_ADD_COUNT - 1 + F4_DEL; |
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291 | // delete a node |
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292 | // must pick a node with parent, and at least one child |
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293 | // already picked a node, but repeat may be needed |
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294 | for (int i = 0; i < 10; i++) |
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295 | { |
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296 | if ((NULL != n1->parent) && (g != n1->parent)) |
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297 | if (NULL != n1->child) |
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298 | break; |
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299 | // try a new one |
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300 | n1 = g->child->randomNode(); |
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301 | } |
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302 | if ((NULL != n1->parent) && (g != n1->parent)) |
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303 | { |
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304 | switch (n1->childCount()) |
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305 | { |
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306 | case 0: break; |
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307 | case 1: // one child |
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308 | { |
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309 | f4_node *n2 = n1->parent; |
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310 | n2->removeChild(n1); |
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311 | if (NULL != n1->child) |
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312 | { |
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313 | n1->child->parent = n2; |
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314 | n2->addChild(n1->child); |
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315 | n1->child = NULL; |
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316 | } |
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317 | if (NULL != n1->child2) |
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318 | { |
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319 | n1->child2->parent = n2; |
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320 | n2->addChild(n1->child2); |
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321 | n1->child2 = NULL; |
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322 | } |
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323 | // destroy n1 |
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324 | n1->parent = NULL; |
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325 | delete n1; |
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326 | } |
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327 | break; |
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328 | |
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329 | case 2: // two children |
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330 | { |
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331 | // two children |
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332 | f4_node *n2 = n1->parent; |
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333 | n2->removeChild(n1); |
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334 | // n1 has two children. pick one randomly 50-50, destroy other |
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335 | if (randomN(2) == 0) |
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336 | { |
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337 | n1->child->parent = n2; |
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338 | n2->addChild(n1->child); |
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339 | n1->child = NULL; |
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340 | n1->child2->parent = NULL; |
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341 | } |
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342 | else |
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343 | { |
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344 | n1->child2->parent = n2; |
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345 | n2->addChild(n1->child2); |
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346 | n1->child2 = NULL; |
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347 | n1->child->parent = NULL; |
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348 | } |
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349 | // destroy n1 |
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350 | n1->parent = NULL; |
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351 | delete n1; |
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352 | } |
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353 | break; |
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354 | } |
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355 | } |
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356 | else return GENOPER_OPFAIL; |
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357 | } |
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358 | break; |
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359 | case F4_MOD: |
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360 | { |
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361 | method = F4_ADD_COUNT - 1 + F4_MOD; |
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362 | // change a node |
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363 | // the only nodes that are modifiable are MUT_CHAN_CODES |
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364 | // try to get a modifiable node |
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365 | // already picked a node, but repeat may be needed |
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366 | int i = 0; |
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367 | while (1) |
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368 | { |
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369 | if (strchr(MUT_CHAN_CODES, n1->name[0])) break; |
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370 | // try a new one |
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371 | n1 = g->child->randomNode(); |
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372 | i++; |
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373 | if (i >= 20) return GENOPER_OPFAIL; |
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374 | } |
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375 | switch (n1->name[0]) |
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376 | { |
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377 | case '<': |
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378 | { |
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379 | // swap children |
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380 | f4_node *n2 = n1->child; n1->child = n1->child2; n1->child2 = n2; |
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381 | } |
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382 | break; |
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383 | case '[': |
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384 | { |
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385 | neuronid = -1; |
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386 | for (int i = 0; i < g->count(); i++) |
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387 | { |
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388 | f4_node *gcur = g->ordNode(i); |
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389 | char *temp = (char*)gcur->name.c_str(); |
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390 | NeuroClass *neuclass = GenoOperators::parseNeuroClass(temp); |
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391 | if (neuclass != NULL) |
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392 | { |
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393 | neulist.push_back(neuclass); |
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394 | } |
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395 | if (gcur == n1) |
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396 | { |
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397 | neuronid = neulist.size() - 1; |
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398 | } |
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399 | } |
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400 | if (neuronid == -1) |
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401 | { |
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402 | return GENOPER_OPFAIL; |
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403 | } |
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404 | linkNodeChangeRandom(n1, neuronid, neulist); |
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405 | } |
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406 | break; |
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407 | |
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408 | case '#': |
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409 | { |
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410 | repeatNodeChangeRandom(n1); |
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411 | } |
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412 | break; |
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413 | } |
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414 | } |
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415 | break; |
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416 | |
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417 | default: //no mutations allowed? |
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418 | return GENOPER_OPFAIL; |
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419 | } |
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420 | |
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421 | return GENOPER_OK; |
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422 | } |
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423 | |
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424 | // make a random [ node |
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425 | void Geno_f4::linkNodeMakeRandom(f4_node *nn, int neuid, vector<NeuroClass*> neulist) const |
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426 | { |
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427 | float prob1; |
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428 | NeuroClass *nc = NULL; |
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429 | |
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430 | // 35% chance one of *GTS |
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431 | prob1 = rnd01; |
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432 | prob1 -= 0.35f; |
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433 | if (prob1 < 0) |
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434 | { |
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435 | // '*', 'G', 'T', or 'S', 1/4 chance each |
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436 | nc = GenoOperators::getRandomNeuroClassWithOutputAndNoInputs(); |
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437 | } |
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438 | if (nc != NULL) |
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439 | { |
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440 | nn->i1 = 1; |
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441 | nn->s1 = nc->getName().c_str(); |
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442 | nn->l1 = 0; |
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443 | } |
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444 | else |
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445 | { |
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446 | // relative input link |
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447 | int id = GenoOperators::getRandomNeuroClassWithOutput(neulist); |
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448 | int relid = neuid - id; |
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449 | nn->l1 = relid; |
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450 | //nn->l1 = (int)(4.0f * (rnd01 - 0.5f)); |
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451 | } |
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452 | // weight |
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453 | nn->f1 = GenoOperators::mutateNeuProperty(nn->f1, NULL, -1); |
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454 | //nn->f1 = 10.0f * (rnd01 - 0.5f); |
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455 | } |
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456 | |
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457 | // change a [ node |
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458 | void Geno_f4::linkNodeChangeRandom(f4_node *nn, int neuid, std::vector<NeuroClass*> neulist) const //rewritten by M.K. - should work as before (not tested) |
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459 | { |
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460 | double probs[3] = { 0.1, 0.3, 0.6 }; |
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461 | NeuroClass *cl; |
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462 | // 10% change type |
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463 | // 30% change link |
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464 | // 60% change weight |
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465 | |
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466 | switch (roulette(probs, 3)) |
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467 | { |
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468 | case 0: // change type |
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469 | // 80% for link, 20% for random sensor |
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470 | if (rnd01 < 0.2f) |
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471 | { |
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472 | cl = GenoOperators::getRandomNeuroClassWithOutputAndNoInputs(); |
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473 | if (cl != NULL) |
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474 | { |
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475 | nn->i1 = 1; |
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476 | nn->s1 = cl->name.c_str(); |
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477 | nn->l1 = 0; |
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478 | } |
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479 | } |
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480 | break; |
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481 | case 1: // change link |
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482 | if (0 == nn->i1) // relative input link |
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483 | { |
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484 | int id = GenoOperators::getRandomNeuroClassWithOutput(neulist); |
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485 | nn->l1 = neuid - id; |
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486 | } |
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487 | //nn->l1 += (int)(2.0f * (rnd01 - 0.5f)); |
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488 | break; |
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489 | case 2: // change weight |
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490 | nn->f1 = GenoOperators::mutateNeuProperty(nn->f1, NULL, -1); |
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491 | //nn->f1 += 1.0f * (rnd01 - 0.5f); |
---|
492 | break; |
---|
493 | } |
---|
494 | } |
---|
495 | |
---|
496 | // make a random : node |
---|
497 | void Geno_f4::nparNodeMakeRandom(f4_node *nn) const |
---|
498 | { |
---|
499 | int sign = (int)(2.0f * rnd01); |
---|
500 | int param = (int)(3.0f * rnd01); |
---|
501 | if (param > 2) param = 2; |
---|
502 | nn->l1 = sign; |
---|
503 | nn->i1 = "!=/"[param]; |
---|
504 | } |
---|
505 | |
---|
506 | // change a repeat # node |
---|
507 | void Geno_f4::repeatNodeChangeRandom(f4_node *nn) const |
---|
508 | { |
---|
509 | int count; |
---|
510 | float prob1; |
---|
511 | |
---|
512 | // change count |
---|
513 | count = nn->i1; |
---|
514 | prob1 = rnd01; |
---|
515 | if (prob1 < 0.5f) count++; |
---|
516 | else count--; |
---|
517 | if (count < 1) count = 1; |
---|
518 | if (count > REP_MAXCOUNT) count = REP_MAXCOUNT; |
---|
519 | nn->i1 = count; |
---|
520 | } |
---|
521 | |
---|
522 | |
---|
523 | int Geno_f4::MutateOneValid(f4_node *& g, int &method) const |
---|
524 | // mutate one, until a valid genotype is obtained |
---|
525 | { |
---|
526 | // ! the genotype is g->child (not g) ! |
---|
527 | int i, res; |
---|
528 | f4_node *gcopy = NULL; |
---|
529 | // try this max 20 times: |
---|
530 | // copy, mutate, then validate |
---|
531 | |
---|
532 | for (i = 0; i < 20; i++) |
---|
533 | { |
---|
534 | gcopy = g->duplicate(); |
---|
535 | |
---|
536 | res = MutateOne(gcopy, method); |
---|
537 | |
---|
538 | if (GENOPER_OK != res) |
---|
539 | { |
---|
540 | // mutation failed, try again |
---|
541 | delete gcopy; |
---|
542 | continue; // for |
---|
543 | } |
---|
544 | // try to validate it |
---|
545 | res = ValidateRec(gcopy, 10); |
---|
546 | // accept if it is OK, or was repaired |
---|
547 | if (GENOPER_OK == res) |
---|
548 | //(GENOPER_REPAIR == res) |
---|
549 | { |
---|
550 | // destroy the original one |
---|
551 | g->destroy(); |
---|
552 | // make it the new one |
---|
553 | *g = *gcopy; |
---|
554 | gcopy->child = NULL; |
---|
555 | gcopy->child2 = NULL; |
---|
556 | delete gcopy; |
---|
557 | res = GENOPER_OK; |
---|
558 | goto retm1v; |
---|
559 | } |
---|
560 | delete gcopy; |
---|
561 | } |
---|
562 | // attempts failed |
---|
563 | res = GENOPER_OPFAIL; |
---|
564 | retm1v: |
---|
565 | return res; |
---|
566 | } |
---|
567 | |
---|
568 | |
---|
569 | int Geno_f4::mutate(char *& g, float & chg, int &method) |
---|
570 | { |
---|
571 | f4_node *root = new f4_node; |
---|
572 | if (f4_processrec(g, 0, root) || root->childCount() != 1) |
---|
573 | { |
---|
574 | delete root; |
---|
575 | return GENOPER_OPFAIL; |
---|
576 | } // could not convert or bad: fail |
---|
577 | // mutate one node, set chg as this percent |
---|
578 | chg = 1.0 / float(root->child->count()); |
---|
579 | if (MutateOneValid(root, method) != GENOPER_OK) |
---|
580 | { |
---|
581 | delete root; |
---|
582 | return GENOPER_OPFAIL; |
---|
583 | } |
---|
584 | // OK, convert back to string |
---|
585 | g[0] = 0; |
---|
586 | root->child->sprintAdj(g); |
---|
587 | delete root; |
---|
588 | return GENOPER_OK; |
---|
589 | } |
---|
590 | |
---|
591 | |
---|
592 | /* |
---|
593 | int Geno_f4::MutateMany(char *& g, float & chg) |
---|
594 | // check if original is valid, then |
---|
595 | // make a number of mutations |
---|
596 | { |
---|
597 | int res, n, i; |
---|
598 | int totNodes = 0; |
---|
599 | int maxToMut = 0; |
---|
600 | |
---|
601 | // convert to tree |
---|
602 | f4_node *root; |
---|
603 | root = new f4_node(); |
---|
604 | res = f4_processrec(g, 0, root); |
---|
605 | if (res) { |
---|
606 | // could not convert, fail |
---|
607 | goto retm; |
---|
608 | } |
---|
609 | if (1 != root->childCount()) { |
---|
610 | res = GENOPER_OPFAIL; |
---|
611 | goto retm; |
---|
612 | } |
---|
613 | |
---|
614 | // check if original is valid |
---|
615 | res = ValidateRec( root, 20 ); |
---|
616 | // might have been repaired! |
---|
617 | if (GENOPER_REPAIR==res) { |
---|
618 | res = GENOPER_OK; |
---|
619 | } |
---|
620 | if (GENOPER_OK != res) { |
---|
621 | goto retm; |
---|
622 | } |
---|
623 | |
---|
624 | // decide number of nodes to mutate |
---|
625 | // decide maximum number of nodes to mutate: 0.25*nodes, min 2 |
---|
626 | totNodes = root->child->count(); |
---|
627 | maxToMut = (int)( 0.25f * totNodes); |
---|
628 | if (maxToMut<2) maxToMut=2; |
---|
629 | if (maxToMut>totNodes) maxToMut=totNodes; |
---|
630 | |
---|
631 | // decide number of nodes to mutate |
---|
632 | n = (int)( 0.5f + rnd01 * maxToMut ); |
---|
633 | if (n<1) n=1; |
---|
634 | if (n>totNodes) n=totNodes; |
---|
635 | // set chg as this percent |
---|
636 | chg = ((float)n) / ((float)totNodes); |
---|
637 | for (i=0; i<n; i++) |
---|
638 | { |
---|
639 | res = MutateOneValid(root); |
---|
640 | if (GENOPER_OK != res) |
---|
641 | { |
---|
642 | res = GENOPER_OPFAIL; |
---|
643 | goto retm; |
---|
644 | } |
---|
645 | } |
---|
646 | // OK, convert back to string |
---|
647 | g[0]=0; |
---|
648 | root->child->sprintAdj(g); |
---|
649 | retm: |
---|
650 | delete root; |
---|
651 | return res; |
---|
652 | } |
---|
653 | */ |
---|
654 | |
---|
655 | |
---|
656 | int Geno_f4::CrossOverOne(f4_node *g1, f4_node *g2, float chg) const |
---|
657 | { |
---|
658 | // ! the genotypes are g1->child and g2->child (not g1 g2) ! |
---|
659 | // single offspring in g1 |
---|
660 | int smin, smax; |
---|
661 | float size; |
---|
662 | f4_node *n1, *n2, *n1p, *n2p; |
---|
663 | |
---|
664 | // determine desired size |
---|
665 | size = (1 - chg) * (float)g1->count(); |
---|
666 | smin = (int)(size*0.9f - 1); |
---|
667 | smax = (int)(size*1.1f + 1); |
---|
668 | // get a random node with desired size |
---|
669 | n1 = g1->child->randomNodeWithSize(smin, smax); |
---|
670 | |
---|
671 | // determine desired size |
---|
672 | size = (1 - chg) * (float)g2->count(); |
---|
673 | smin = (int)(size*0.9f - 1); |
---|
674 | smax = (int)(size*1.1f + 1); |
---|
675 | // get a random node with desired size |
---|
676 | n2 = g2->child->randomNodeWithSize(smin, smax); |
---|
677 | |
---|
678 | // exchange the two nodes: |
---|
679 | n1p = n1->parent; |
---|
680 | n2p = n2->parent; |
---|
681 | n1p->removeChild(n1); |
---|
682 | n1p->addChild(n2); |
---|
683 | n2p->removeChild(n2); |
---|
684 | n2p->addChild(n1); |
---|
685 | n1->parent = n2p; |
---|
686 | n2->parent = n1p; |
---|
687 | |
---|
688 | return GENOPER_OK; |
---|
689 | } |
---|
690 | |
---|
691 | int Geno_f4::crossOver(char *&g1, char *&g2, float &chg1, float &chg2) |
---|
692 | { |
---|
693 | f4_node root1, root2, *copy1, *copy2; |
---|
694 | |
---|
695 | // convert genotype strings into tree structures |
---|
696 | if (f4_processrec(g1, 0, &root1) || (root1.childCount() != 1)) return GENOPER_OPFAIL; |
---|
697 | if (f4_processrec(g2, 0, &root2) || (root2.childCount() != 1)) return GENOPER_OPFAIL; |
---|
698 | |
---|
699 | // decide amounts of crossover, 0.25-0.75 |
---|
700 | // adam: seems 0.1-0.9 -- MacKo |
---|
701 | chg1 = 0.1f + 0.8f*rnd01; |
---|
702 | chg2 = 0.1f + 0.8f*rnd01; |
---|
703 | |
---|
704 | copy1 = root1.duplicate(); |
---|
705 | if (CrossOverOne(copy1, &root2, chg1) != GENOPER_OK) { delete copy1; copy1 = NULL; } |
---|
706 | copy2 = root2.duplicate(); |
---|
707 | if (CrossOverOne(copy2, &root1, chg2) != GENOPER_OK) { delete copy2; copy2 = NULL; } |
---|
708 | |
---|
709 | g1[0] = 0; |
---|
710 | g2[0] = 0; |
---|
711 | if (copy1) { copy1->child->sprintAdj(g1); delete copy1; } |
---|
712 | if (copy2) { copy2->child->sprintAdj(g2); delete copy2; } |
---|
713 | if (g1[0] || g2[0]) return GENOPER_OK; else return GENOPER_OPFAIL; |
---|
714 | } |
---|
715 | |
---|
716 | uint32_t Geno_f4::style(const char *g, int pos) |
---|
717 | { |
---|
718 | char ch = g[pos]; |
---|
719 | |
---|
720 | // style categories |
---|
721 | #define STYL4CAT_MODIFIC F14_MODIFIERS "," |
---|
722 | #define STYL4CAT_NEUMOD "[]:+-/!=" |
---|
723 | #define STYL4CAT_NEUSPECIAL "|@*" |
---|
724 | #define STYL4CAT_DIGIT "0123456789." |
---|
725 | #define STYL4CAT_REST "XN<># " |
---|
726 | |
---|
727 | if (!isalpha(ch) && !strchr(STYL4CAT_MODIFIC STYL4CAT_NEUMOD STYL4CAT_NEUSPECIAL STYL4CAT_DIGIT STYL4CAT_REST "\t", ch)) |
---|
728 | { |
---|
729 | return GENSTYLE_CS(0, GENSTYLE_INVALID); |
---|
730 | } |
---|
731 | uint32_t style = GENSTYLE_CS(0, GENSTYLE_STRIKEOUT); //default, should be changed below |
---|
732 | if (strchr("X ", ch)) style = GENSTYLE_CS(0, GENSTYLE_NONE); |
---|
733 | else if (strchr("N", ch)) style = GENSTYLE_RGBS(0, 200, 0, GENSTYLE_NONE); |
---|
734 | else if (strchr("<", ch)) style = GENSTYLE_RGBS(0, 0, 200, GENSTYLE_BOLD); |
---|
735 | else if (strchr(">", ch)) style = GENSTYLE_RGBS(0, 0, 100, GENSTYLE_NONE); |
---|
736 | else if (strchr(STYL4CAT_DIGIT, ch)) style = GENSTYLE_RGBS(100, 100, 100, GENSTYLE_NONE); |
---|
737 | else if (strchr(STYL4CAT_MODIFIC, ch)) style = GENSTYLE_RGBS(100, 100, 100, GENSTYLE_NONE); |
---|
738 | else if (strchr(STYL4CAT_NEUMOD, ch)) style = GENSTYLE_RGBS(0, 150, 0, GENSTYLE_NONE); |
---|
739 | if (isalpha(ch) || strchr(STYL4CAT_NEUSPECIAL, ch)) |
---|
740 | { |
---|
741 | while (pos > 0) |
---|
742 | { |
---|
743 | pos--; |
---|
744 | if (!(isalpha(g[pos]) || strchr(STYL4CAT_NEUSPECIAL, ch))) |
---|
745 | { |
---|
746 | if (isupper(g[pos + 1]) && (g[pos] == ':' || g[pos] == '[')) // name of neuron class |
---|
747 | style = GENSTYLE_RGBS(150, 0, 150, GENSTYLE_ITALIC); |
---|
748 | else // property |
---|
749 | style = GENSTYLE_RGBS(100, 100, 100, GENSTYLE_NONE); |
---|
750 | } |
---|
751 | } |
---|
752 | } |
---|
753 | return style; |
---|
754 | } |
---|