1 | /* |
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2 | * conv_f8tof1.cpp |
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3 | * L-systemToF1 |
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4 | * |
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5 | * Created by Maciej Wajcht on 08-03-21. |
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6 | * Copyright 2008 __MyCompanyName__. All rights reserved. |
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7 | * |
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8 | */ |
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9 | |
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10 | #include "conv_f8tof1.h" |
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11 | #include "conv_f8_utils.h" |
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12 | #include <sstream> |
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13 | #include <string> |
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14 | #include <algorithm> |
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15 | #include "lexglobal.h" |
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16 | #include "conv_f8tof1_scanner.h" |
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17 | namespace prs { |
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18 | #include "conv_f8tof1_grammar.c" |
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19 | } |
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20 | |
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21 | #if CONV_DEBUG > 0 |
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22 | #include <iostream> |
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23 | #endif |
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24 | |
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25 | #define CONV_DEBUG 0 //0 - off, 1 - minimal, 2 - full |
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26 | |
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27 | using namespace std; |
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28 | |
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29 | Lsystem::Lsystem() |
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30 | { |
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31 | for(int i=0;i<strlen(GenoConv_F8ToF1::simpleprods);i++) |
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32 | { |
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33 | string s(1,GenoConv_F8ToF1::simpleprods[i]); |
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34 | SString ss(s.c_str()); |
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35 | this->primitiveProductions.insert(make_pair(s, new PrimitiveProduction(ss))); |
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36 | } |
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37 | } |
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38 | |
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39 | Lsystem::~Lsystem() { |
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40 | for (map<string, Production*>::iterator iter = this->productions.begin(); |
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41 | iter != this->productions.end(); iter++) { |
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42 | delete iter->second; |
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43 | } |
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44 | for (map<string, PrimitiveProduction*>::iterator iter = this->primitiveProductions.begin(); |
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45 | iter != this->primitiveProductions.end(); iter++) { |
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46 | delete iter->second; |
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47 | } |
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48 | for (map<string, ParamProduction*>::iterator iter = this->paramProductions.begin(); |
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49 | iter != this->paramProductions.end(); iter++) { |
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50 | delete iter->second; |
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51 | } |
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52 | for (vector<NeuronProduction*>::iterator iter = this->neuronProductions.begin(); |
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53 | iter != this->neuronProductions.end(); iter++) { |
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54 | delete *iter; |
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55 | } |
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56 | } |
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57 | |
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58 | PrimitiveProduction* Lsystem::getPrimitiveProduction(SString name) { |
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59 | string sname = sstringToString(name); |
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60 | if (this->primitiveProductions.find(sname) == this->primitiveProductions.end()) { |
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61 | PrimitiveProduction *pp = new PrimitiveProduction(name); |
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62 | this->primitiveProductions.insert(make_pair(sname, pp)); |
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63 | } |
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64 | return this->primitiveProductions[sname]; |
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65 | } |
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66 | |
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67 | ParamProduction* Lsystem::getParamProduction(SString name) { |
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68 | string sname = sstringToString(name); |
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69 | if (this->paramProductions.find(sname) == this->paramProductions.end()) { |
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70 | ParamProduction *pp = new ParamProduction(name); |
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71 | this->paramProductions.insert(make_pair(sname, pp)); |
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72 | } |
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73 | return this->paramProductions[sname]; |
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74 | } |
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75 | |
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76 | SString Lsystem::toString() { |
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77 | this->removeEmptySubproductionsAndProductions(); |
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78 | SString result = ""; |
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79 | result += SString::valueOf(this->iterations) + "\n"; |
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80 | for (map<string, double>::iterator it = this->startParams.begin(); |
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81 | it != this->startParams.end(); it++) { |
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82 | result += stringToSString(it->first) + "=" + SString::valueOf(it->second) + "\n"; |
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83 | } |
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84 | result += SString("---") + "\n"; |
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85 | result += stringToSString(this->firstProductionName) + "\n"; |
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86 | for (map<string, Production*>::iterator prodIter = this->productions.begin(); |
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87 | prodIter != this->productions.end(); prodIter++) { |
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88 | Production *p = prodIter->second; |
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89 | result += p->name + "("; |
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90 | for (int i = 1; i <= p->parameters.size(); i++) { |
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91 | result += p->parameters.getParameterName(i); |
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92 | if (i < p->parameters.size()) { |
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93 | result += ","; |
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94 | } |
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95 | } |
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96 | result += "):"; |
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97 | for (int subprodIter = 0; subprodIter < p->subproductions.size(); subprodIter++) { |
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98 | SubProduction *sp = &(p->subproductions[subprodIter]); |
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99 | for (int condIter = 0; condIter < sp->conditions.size(); condIter++) { |
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100 | Condition *c = &(sp->conditions[condIter]); |
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101 | RelationType r = c->relation; |
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102 | SString op = (r == r_greater) ? ">" : (r == r_greaterEqual) ? ">=" : (r == r_less) ? "<" : |
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103 | (r == r_lessEqual) ? "<=" : (r == r_equal) ? "==" : (r == r_different) ? "!=" : ""; |
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104 | result += c->parameter + op + SString::valueOf(c->value); |
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105 | if (condIter != sp->conditions.size() - 1) { |
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106 | result += ","; |
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107 | } |
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108 | } |
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109 | if (sp->conditions.size() > 0) { |
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110 | result += SString("|"); |
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111 | } |
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112 | for (vector<ActionStrP>::iterator actionIter = sp->actions.begin(); |
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113 | actionIter != sp->actions.end(); actionIter++) { |
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114 | ActionStrP *a = &(*actionIter); |
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115 | if (a->action == NULL) { |
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116 | continue; |
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117 | } |
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118 | result += a->action->getF8Representation(); |
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119 | if (!a->action->ignoreParams) { |
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120 | result += SString("("); |
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121 | for (int paramIter = 0; paramIter < a->params.size(); paramIter++) { |
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122 | result += convertReversePolishNotationToNatural(a->params[paramIter]); |
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123 | if (paramIter != a->params.size() - 1) { |
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124 | result += ","; |
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125 | } |
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126 | } |
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127 | result += SString(")"); |
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128 | } |
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129 | } |
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130 | if (subprodIter != p->subproductions.size() - 1) { |
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131 | result += SString(":"); |
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132 | } |
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133 | } |
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134 | result += SString("\n"); |
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135 | } |
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136 | return result; |
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137 | } |
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138 | |
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139 | vector<Action*> Lsystem::getAllActions(bool normal, bool primitives, bool params, bool neurons) { |
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140 | vector<Action*> actions; |
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141 | if (normal) { |
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142 | for (map<string, Production*>::iterator iter = this->productions.begin(); |
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143 | iter != this->productions.end(); iter++) { |
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144 | actions.push_back(iter->second); |
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145 | } |
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146 | } |
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147 | if (primitives) { |
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148 | for (map<string, PrimitiveProduction*>::iterator iter = this->primitiveProductions.begin(); |
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149 | iter != this->primitiveProductions.end(); iter++) { |
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150 | actions.push_back(iter->second); |
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151 | } |
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152 | } |
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153 | if (params) { |
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154 | for (map<string, ParamProduction*>::iterator iter = this->paramProductions.begin(); |
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155 | iter != this->paramProductions.end(); iter++) { |
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156 | actions.push_back(iter->second); |
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157 | } |
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158 | } |
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159 | if (neurons) { |
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160 | for (vector<NeuronProduction*>::iterator iter = this->neuronProductions.begin(); |
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161 | iter != this->neuronProductions.end(); iter++) { |
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162 | actions.push_back(*iter); |
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163 | } |
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164 | } |
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165 | return actions; |
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166 | } |
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167 | |
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168 | void Lsystem::removeEmptySubproductionsAndProductions() { |
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169 | /* po wykonaniu moga pozostac puste subprodukcje (usuwanie wywolan do usunietych wczesniej produkcji |
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170 | * ale i tak znikna one przy kolejnym wywolaniu, tak wiec ilosc smieci nie powinna byc razaca |
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171 | */ |
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172 | |
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173 | //delete empty subproductions |
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174 | for (map<string, Production*>::iterator prodIter = this->productions.begin(); |
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175 | prodIter != this->productions.end(); prodIter++) { |
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176 | vector<SubProduction> *subproductions = &(prodIter->second->subproductions); |
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177 | for (vector<SubProduction>::iterator i = subproductions->begin(); i != subproductions->end(); /*nothing*/) { |
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178 | if ((*i).actions.size() == 0) { |
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179 | i = subproductions->erase(i); |
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180 | } else { |
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181 | i++; |
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182 | } |
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183 | } |
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184 | } |
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185 | |
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186 | //find empty productions |
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187 | vector<SString> emptyProductionNames; |
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188 | for (map<string, Production*>::iterator prodIter = this->productions.begin(); |
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189 | prodIter != this->productions.end(); prodIter++) { |
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190 | if (prodIter->second->subproductions.size() == 0 && |
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191 | sstringToString(prodIter->second->name) != this->firstProductionName) { |
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192 | emptyProductionNames.push_back(prodIter->second->name); |
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193 | } |
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194 | } |
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195 | |
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196 | //delete calls to empty productions |
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197 | for (map<string, Production*>::iterator prodIter = this->productions.begin(); |
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198 | prodIter != this->productions.end(); prodIter++) { |
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199 | vector<SubProduction> *subproductions = &(prodIter->second->subproductions); |
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200 | for (vector<SubProduction>::iterator subProdIter = subproductions->begin(); |
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201 | subProdIter != subproductions->end(); subProdIter++) { |
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202 | SubProduction *sp = &(*subProdIter); |
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203 | for (vector<ActionStrP>::iterator actionIter = sp->actions.begin(); |
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204 | actionIter != sp->actions.end(); /*nothing*/) { |
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205 | bool deleted = false; |
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206 | if ((*actionIter).action != NULL) { |
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207 | vector<SString>::iterator result = find(emptyProductionNames.begin(), emptyProductionNames.end(), |
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208 | (*actionIter).action->name); |
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209 | if (result != emptyProductionNames.end()) { //emptyProductionNames contains the action name |
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210 | actionIter = sp->actions.erase(actionIter); |
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211 | deleted = true; |
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212 | } |
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213 | } |
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214 | if (!deleted) { |
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215 | actionIter++; |
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216 | } |
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217 | } |
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218 | } |
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219 | } |
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220 | |
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221 | //delete empty productions |
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222 | for(int i = 0; i < emptyProductionNames.size(); i++) { |
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223 | this->productions.erase(sstringToString(emptyProductionNames[i])); |
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224 | } |
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225 | } |
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226 | |
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227 | ostream& operator<<(ostream& os, const Condition& c) { |
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228 | RelationType r = c.relation; |
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229 | SString op = (r == r_greater) ? ">" : (r == r_greaterEqual) ? ">=" : (r == r_less) ? "<" : |
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230 | (r == r_lessEqual) ? "<=" : (r == r_equal) ? "==" : (r == r_different) ? "!=" : ""; |
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231 | os << c.parameter << " " << op << " " << c.value; |
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232 | return os; |
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233 | } |
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234 | |
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235 | const double ParameterCollection::getValue(int position) { |
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236 | string name = this->parameters[position - 1]; |
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237 | return this->paramValues[name]; |
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238 | } |
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239 | |
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240 | const double ParameterCollection::getValue(SString name) { |
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241 | return this->paramValues[sstringToString(name)]; |
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242 | } |
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243 | |
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244 | const SString ParameterCollection::getParameterName(int position) { |
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245 | return stringToSString(this->parameters[position - 1]); |
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246 | } |
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247 | |
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248 | const int ParameterCollection::getParameterPosition(SString name) { |
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249 | for (int i = 0; i < this->parameters.size(); i++) { |
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250 | string &s = this->parameters[i]; |
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251 | if (s == sstringToString(name)) { |
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252 | return i + 1; |
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253 | } |
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254 | } |
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255 | return -1; |
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256 | } |
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257 | |
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258 | void ParameterCollection::setValue(int position, double value) { |
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259 | string name = this->parameters[position - 1]; |
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260 | this->paramValues[name] = value; |
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261 | } |
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262 | |
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263 | void ParameterCollection::setValue(SString name, double value) { |
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264 | this->paramValues[sstringToString(name)] = value; |
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265 | } |
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266 | |
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267 | void ParameterCollection::addParameter(SString name, int position, double value) { |
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268 | //TODO sprawdzenie czy position > 0 |
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269 | string sname = sstringToString(name); |
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270 | if (position == -1) { |
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271 | this->parameters.push_back(sname); |
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272 | this->paramValues[sname] = value; |
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273 | } else { |
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274 | this->parameters.reserve(position); |
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275 | this->parameters.insert(this->parameters.begin() + (position -1), sname); |
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276 | this->paramValues[sname] = value; |
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277 | } |
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278 | //this->paramValues[name] = value; |
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279 | } |
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280 | |
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281 | const int ParameterCollection::size() { |
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282 | return this->parameters.size(); |
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283 | } |
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284 | |
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285 | void ParameterCollection::removeParameter(int position) { |
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286 | string name = this->parameters[position - 1]; |
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287 | vector<string>::iterator it = this->parameters.begin() + (position - 1); |
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288 | this->parameters.erase(it); |
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289 | this->paramValues.erase(name); |
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290 | } |
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291 | |
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292 | void ParameterCollection::removeParameter(SString name) { |
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293 | int idx = getParameterPosition(name); |
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294 | this->removeParameter(idx); |
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295 | } |
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296 | |
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297 | bool ParameterCollection::paramExist(SString name) { |
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298 | string sname = sstringToString(name); |
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299 | for (vector<string>::iterator it = this->parameters.begin(); it != this->parameters.end(); it++) { |
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300 | if ((*it) == sname) { |
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301 | return true; |
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302 | } |
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303 | } |
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304 | return false; |
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305 | } |
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306 | |
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307 | PrimitiveProduction::PrimitiveProduction(const SString command) { |
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308 | this->f8command = command; |
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309 | this->ignoreParams = true; |
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310 | if (command == SString("[")) { |
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311 | this->f1command = SString("("); |
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312 | this->name = SString("_primitive production '[' => '('"); |
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313 | } else if (command == SString("]")) { |
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314 | this->f1command = SString(")"); |
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315 | this->name = SString("_primitive production ']' => ')'"); |
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316 | } else if (command == SString("^")) { |
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317 | this->f1command = SString(","); |
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318 | this->name = SString("_primitive production '^' => ','"); |
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319 | } else { |
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320 | this->f1command = command; |
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321 | this->name = SString("_primitive production '") + command + "'"; |
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322 | } |
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323 | } |
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324 | |
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325 | const SString PrimitiveProduction::getF1Genotype(const vector<double> params) { |
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326 | #if CONV_DEBUG > 1 |
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327 | cout << "@@@@@ Prymityw: " << this->f1command << endl; |
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328 | #endif |
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329 | return SString(this->f1command); |
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330 | } |
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331 | |
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332 | const list<ActionP> PrimitiveProduction::getActionList(const vector<double> param) { |
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333 | list<ActionP> l; |
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334 | ActionP ap; |
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335 | ap.action = this; |
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336 | ap.params = param; |
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337 | l.push_back(ap); |
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338 | return l; |
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339 | } |
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340 | |
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341 | const SString PrimitiveProduction::getF8Representation() { |
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342 | return this->f8command; |
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343 | } |
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344 | |
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345 | ParamProduction::ParamProduction(const SString paramName) { |
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346 | this->paramName = paramName; |
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347 | this->name = SString("_param production") + paramName; |
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348 | this->ignoreParams = true; |
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349 | } |
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350 | |
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351 | const SString ParamProduction::getF1Genotype(const vector<double> params) { |
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352 | SString s = SString::valueOf(params[0]); |
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353 | #if CONV_DEBUG > 1 |
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354 | cout << "@@@@@ Param value: " << this->paramName << ": " << params[0] << endl; |
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355 | #endif |
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356 | return s; |
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357 | |
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358 | } |
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359 | |
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360 | const list<ActionP> ParamProduction::getActionList(const vector<double> param) { |
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361 | list<ActionP> l; |
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362 | ActionP ap; |
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363 | ap.action = this; |
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364 | ap.params = param; |
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365 | l.push_back(ap); |
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366 | return l; |
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367 | |
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368 | } |
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369 | |
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370 | const SString ParamProduction::getF8Representation() { |
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371 | return this->paramName; |
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372 | } |
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373 | |
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374 | NeuronProduction::NeuronProduction(const SString body) { |
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375 | this->body = body; |
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376 | this->name = SString("_neuron production") + body; |
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377 | this->ignoreParams = true; |
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378 | } |
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379 | |
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380 | const SString NeuronProduction::getF1Genotype(const vector<double> params) { |
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381 | return this->body; |
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382 | } |
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383 | |
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384 | const list<ActionP> NeuronProduction::getActionList(const vector<double> param) { |
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385 | list<ActionP> l; |
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386 | ActionP ap; |
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387 | ap.action = this; |
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388 | ap.params = param; |
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389 | l.push_back(ap); |
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390 | return l; |
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391 | |
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392 | } |
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393 | |
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394 | const SString NeuronProduction::getF8Representation() { |
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395 | return this->body; |
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396 | } |
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397 | |
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398 | Production::Production() { |
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399 | this->ignoreParams = false; |
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400 | } |
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401 | |
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402 | const SString Production::getF1Genotype(const vector<double> params) { |
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403 | return SString(); //return empty |
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404 | } |
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405 | |
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406 | const list<ActionP> Production::getActionList(const vector<double> params) { |
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407 | list<ActionP> l; |
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408 | #if CONV_DEBUG > 1 |
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409 | cout << "params.size(): " << params.size() << ", this->parameters.size(): " << this->parameters.size() << endl; |
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410 | #endif |
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411 | for (int i = 0; i < params.size() && i < this->parameters.size(); i++) { |
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412 | this->parameters.setValue(i + 1, params[i]); |
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413 | } |
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414 | |
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415 | //iterate through subproductions |
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416 | for (vector<SubProduction>::iterator subProdIter = this->subproductions.begin(); |
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417 | subProdIter != this->subproductions.end(); subProdIter++) { |
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418 | #if CONV_DEBUG > 1 |
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419 | cout << "this->subproductions.size(): " << this->subproductions.size() << endl; |
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420 | #endif |
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421 | SubProduction &sp = *subProdIter; |
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422 | bool conditionsOK = true; |
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423 | //check conditions of subproduction |
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424 | for (vector<Condition>::iterator condIter = sp.conditions.begin(); |
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425 | condIter != sp.conditions.end(); condIter++) { |
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426 | if (conditionsOK == false) { |
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427 | break; //because it's no use checking further |
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428 | } |
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429 | Condition &c = *condIter; |
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430 | switch (c.relation) { |
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431 | case r_greater: |
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432 | if (this->parameters.getValue(c.parameter) <= c.value) { |
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433 | conditionsOK = false; |
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434 | } |
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435 | break; |
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436 | case r_greaterEqual: |
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437 | if (this->parameters.getValue(c.parameter) < c.value) { |
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438 | conditionsOK = false; |
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439 | } |
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440 | break; |
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441 | case r_less: |
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442 | if (this->parameters.getValue(c.parameter) >= c.value) { |
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443 | conditionsOK = false; |
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444 | } |
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445 | break; |
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446 | case r_lessEqual: |
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447 | if (this->parameters.getValue(c.parameter) > c.value) { |
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448 | conditionsOK = false; |
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449 | } |
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450 | break; |
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451 | case r_equal: |
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452 | if (this->parameters.getValue(c.parameter) != c.value) { |
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453 | conditionsOK = false; |
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454 | } |
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455 | break; |
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456 | case r_different: |
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457 | if (this->parameters.getValue(c.parameter) == c.value) { |
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458 | conditionsOK = false; |
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459 | } |
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460 | break; |
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461 | } |
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462 | } |
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463 | if (conditionsOK) { |
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464 | //iterate through each action in subproduction |
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465 | for (int i = 0; i < sp.actions.size(); i++) { |
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466 | #if CONV_DEBUG > 1 |
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467 | cout << "sp.actions.size(): " << sp.actions.size() << endl; |
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468 | #endif |
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469 | Action *action = sp.actions[i].action; |
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470 | vector<SString> strParams = sp.actions[i].params; |
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471 | vector<double> params; |
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472 | //replace parameter names with values |
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473 | for (vector<SString>::iterator paramIter = strParams.begin(); |
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474 | paramIter != strParams.end(); paramIter++) { |
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475 | SString parameter; |
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476 | SString element; |
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477 | int pos = 0; |
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478 | while ((*paramIter).getNextToken(pos, element, ';')) { |
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479 | if (element[0] == 'n') { |
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480 | double val = this->parameters.getValue(element); |
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481 | parameter += SString::valueOf(val) + ";"; |
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482 | } else { |
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483 | parameter += element + ";"; |
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484 | } |
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485 | } |
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486 | params.push_back(parseExpression(parameter)); |
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487 | } |
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488 | |
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489 | ActionP ap; |
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490 | ap.action = action; |
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491 | ap.params = params; |
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492 | l.push_back(ap); |
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493 | } |
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494 | } |
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495 | } |
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496 | |
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497 | return l; |
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498 | } |
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499 | |
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500 | const SString Production::getF8Representation() { |
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501 | return this->name; |
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502 | } |
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503 | |
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504 | |
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505 | |
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506 | |
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507 | |
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508 | |
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509 | |
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510 | |
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511 | |
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512 | const char* GenoConv_F8ToF1::simpleprods="X[]^RrLlAaCcFfMmSsIiQqWw"; //Ee skipped |
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513 | |
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514 | |
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515 | #define FIELDSTRUCT GenoConv_F8ToF1 |
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516 | |
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517 | static ParamEntry GENOCONVf8param_tab[]= |
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518 | { |
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519 | {"Genetics: f8: Converter",1,1,}, |
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520 | {"f8conv_maxlen", 0, 0, "Maximal genotype length", "d 10 10000 500", FIELD(maxF1Length),"Maximal length of the resulting f1 genotype, in characters. If the f8 L-system produces longer f1 genotype, it will be considered incorrect.", }, |
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521 | {0,}, |
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522 | }; |
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523 |
|
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524 | #undef FIELDSTRUCT
|
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525 |
|
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526 | Param GenoConv_F8ToF1::staticpar;
|
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527 |
|
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528 | |
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529 | GenoConv_F8ToF1::GenoConv_F8ToF1() |
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530 | { |
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531 | name = "Generative encoding"; |
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532 | in_format = '8'; |
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533 | out_format = '1'; |
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534 | mapsupport = 0; |
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535 | maxF1Length = 500; |
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536 | par.setParamTab(GENOCONVf8param_tab); |
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537 | par.select(this); |
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538 | par.setDefault(); |
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539 | } |
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540 | |
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541 | |
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542 | vector<SString> GenoConv_F8ToF1::readProductionNames(const SString &in) { |
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543 | vector<SString> names; |
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544 | SString line; |
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545 | int pos = 0; |
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546 | bool afterFirstProd = false; |
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547 | //ParsingStatus status = firstLine; |
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548 | while (in.getNextToken(pos, line, '\n')) { |
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549 | #if CONV_DEBUG > 1 |
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550 | std::cout << "### Line: " << line << std::endl; |
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551 | #endif |
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552 | if (line.startsWith("P") && line.indexOf('(', 0) == -1) { |
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553 | afterFirstProd = true; |
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554 | continue; |
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555 | } |
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556 | if (!afterFirstProd) { |
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557 | continue; |
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558 | } |
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559 | int lParenIndex = line.indexOf('(', 0); |
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560 | if (line.startsWith("P") && lParenIndex != -1) { |
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561 | SString prodName = line.substr(0, lParenIndex); |
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562 | #if CONV_DEBUG > 1 |
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563 | std::cout << "###Production: " << prodName << std::endl; |
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564 | #endif |
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565 | names.push_back(prodName); |
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566 | } |
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567 | } |
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568 | return names; |
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569 | } |
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570 | |
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571 | bool GenoConv_F8ToF1::checkSyntax(const char *geno) { |
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572 | return this->parseInput(geno, NULL); |
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573 | } |
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574 | |
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575 | SString GenoConv_F8ToF1::convert(SString &in, MultiMap *mmap) { |
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576 | #if CONV_DEBUG > 0 |
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577 | cout << "convert() start" << endl; |
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578 | #endif |
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579 | SString dst = ""; |
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580 | const char* src = in; |
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581 | |
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582 | if (in.len() < 1 || !this->checkSyntax(src)) { |
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583 | return SString(); |
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584 | } |
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585 | |
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586 | Lsystem *lsystem = this->createLsystem(in); |
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587 | if (lsystem == NULL) { |
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588 | return SString(); |
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589 | } |
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590 | if (lsystem->firstProductionName.empty()) { |
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591 | delete lsystem; |
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592 | return SString(); |
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593 | } |
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594 | |
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595 | #if CONV_DEBUG > 0 |
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596 | for (map<string, Production*>::iterator i1 = lsystem->productions.begin(); i1 != lsystem->productions.end(); i1++) { |
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597 | Production *p = i1->second; |
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598 | cout << "Production: " << p->name << endl; |
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599 | for (vector<SubProduction>::iterator i2 = p->subproductions.begin(); i2 != p->subproductions.end(); i2++) { |
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600 | SubProduction sp = *i2; |
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601 | cout << "\tConditions" << endl; |
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602 | for (vector<Condition>::iterator i3 = sp.conditions.begin(); i3 != sp.conditions.end(); i3++) { |
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603 | cout << "\t\t" << *i3 << endl; |
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604 | } |
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605 | cout << "\tAction : params" << endl; |
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606 | for (int i = 0; i < sp.actions.size(); i++) { |
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607 | Action *a = sp.actions[i].action; |
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608 | vector<SString> strParams = sp.actions[i].params; |
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609 | cout << "\t\t" << a->name << " : "; |
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610 | for (vector<SString>::iterator i4 = strParams.begin(); i4 != strParams.end(); i4++) { |
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611 | cout << *i4 << ", "; |
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612 | } |
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613 | cout << endl; |
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614 | } |
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615 | } |
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616 | } |
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617 | #endif |
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618 | #if CONV_DEBUG > 1 |
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619 | cout << "&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&" << endl; |
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620 | #endif |
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621 | |
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622 | //cout << "convert() 1" << endl; |
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623 | //set parameters for start production |
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624 | Production *firstProduction = lsystem->productions[lsystem->firstProductionName]; |
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625 | if (firstProduction==NULL) { |
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626 | delete lsystem; |
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627 | return SString(""); //should never happen because of syntax validation |
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628 | } |
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629 | |
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630 | vector<double> params; |
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631 | params.assign(lsystem->startParams.size(), 0.0); |
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632 | //cout << "startParams->size: " << lsystem->startParams.size() << endl; |
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633 | for (map<string, double>::iterator iter = lsystem->startParams.begin(); |
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634 | iter != lsystem->startParams.end(); iter++) |
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635 | { |
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636 | int position = firstProduction->parameters.getParameterPosition(stringToSString(iter->first)); |
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637 | //cout << "position of " << iter->first << ": " << position << endl; |
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638 | //params.insert(params.begin() + (position - 1), iter->second); //no need because the vector has required length (assign above) |
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639 | if (position>params.size()) { |
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640 | delete lsystem; |
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641 | return SString(""); |
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642 | } |
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643 | params[position - 1] = iter->second; |
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644 | } |
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645 | |
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646 | //cout << "convert() 2" << endl; |
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647 | |
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648 | ActionP ap; |
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649 | ap.action = firstProduction; |
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650 | ap.params = params; |
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651 | |
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652 | list<ActionP> actionList; |
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653 | actionList.push_back(ap); |
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654 | |
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655 | //cout << "iterations: " << lsystem->iterations << endl; |
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656 | for (int i = 0; i < lsystem->iterations; i++) { |
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657 | //cout << "convert() 2.1" << endl; |
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658 | list<ActionP> newList; |
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659 | for (list<ActionP>::iterator iter = actionList.begin(); iter != actionList.end(); iter++) { |
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660 | //cout << "convert() 2.1.1" << endl; |
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661 | Action *a = (*iter).action; |
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662 | vector<double> p = (*iter).params; |
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663 | if (a != NULL) { |
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664 | list<ActionP> tmpList = a->getActionList(p); |
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665 | newList.insert(newList.end(), tmpList.begin(), tmpList.end()); |
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666 | } |
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667 | } |
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668 | actionList = newList; |
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669 | } |
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670 | |
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671 | #if CONV_DEBUG > 1 |
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672 | cout << "&&&&&&&&&&&&&&&&&&&&& ^ &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&" << endl; |
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673 | for (list<ActionP>::iterator it = actionList.begin(); it != actionList.end(); it++) { |
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674 | cout << (*it).action->name << "("; |
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675 | for (vector<double>::iterator it2 = (*it).params.begin(); it2 != (*it).params.end(); it2++) { |
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676 | cout << *it2 << ", "; |
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677 | } |
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678 | cout << ")" << endl; |
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679 | } |
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680 | cout << "&&&&&&&&&&&&&&&&&&&&& ^ &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&" << endl; |
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681 | #endif |
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682 | for (list<ActionP>::iterator iter = actionList.begin(); iter != actionList.end(); iter++) { |
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683 | Action *a = (*iter).action; |
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684 | vector<double> p = (*iter).params; |
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685 | if (a != NULL) { |
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686 | dst += a->getF1Genotype(p); |
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687 | if (dst.len() > maxF1Length) { |
---|
688 | delete lsystem; |
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689 | return SString(); //genotype becomes too long so we abort conversion |
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690 | } |
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691 | } |
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692 | } |
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693 | |
---|
694 | delete lsystem; |
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695 | |
---|
696 | #if CONV_DEBUG > 0 |
---|
697 | cout << "convert() end" << endl; |
---|
698 | #endif |
---|
699 | return dst; |
---|
700 | } |
---|
701 | |
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702 | //Lsystem* GenoConv_F8ToF1::createLsystem(const SString &in) { |
---|
703 | Lsystem* GenoConv_F8ToF1::createLsystem(SString in) { |
---|
704 | #if CONV_DEBUG > 0 |
---|
705 | cout << "createLsystem() start" << endl; |
---|
706 | #endif |
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707 | Lsystem *lsys = new Lsystem(); |
---|
708 | |
---|
709 | //read production names and create objects for them |
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710 | vector<SString> names = this->readProductionNames(in); |
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711 | for (vector<SString>::iterator nameIter = names.begin(); nameIter != names.end(); nameIter++) { |
---|
712 | Production *production = new Production(); |
---|
713 | production->name = *nameIter; |
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714 | //lsystem->productions.insert(make_pair(*nameIter, production)); |
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715 | lsys->productions[sstringToString(*nameIter)] = production; |
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716 | } |
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717 | |
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718 | #if CONV_DEBUG > 1 |
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719 | cout << "lsystemprodsize " << lsys->productions.size() << endl; |
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720 | for (map<string, Production*>::iterator iii = lsys->productions.begin(); iii != lsys->productions.end(); iii++) { |
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721 | cout << "PPP '" << iii->first << "' adr " << (long) &(iii->second) << endl; |
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722 | } |
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723 | #endif |
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724 | |
---|
725 | const char* src = in; |
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726 | bool result = this->parseInput(src, lsys); |
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727 | if (!result) { |
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728 | delete lsys; |
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729 | return NULL; |
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730 | } |
---|
731 | |
---|
732 | #if CONV_DEBUG > 1 |
---|
733 | |
---|
734 | cout << "@@@@@ Parsed" << endl; |
---|
735 | |
---|
736 | cout << "&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&" << endl; |
---|
737 | #endif |
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738 | //final check |
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739 | for (map<string, Production*>::iterator prodIter = lsys->productions.begin(); |
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740 | prodIter != lsys->productions.end(); prodIter++) { |
---|
741 | for (vector<SubProduction>::iterator subProdIter = prodIter->second->subproductions.begin(); |
---|
742 | subProdIter != prodIter->second->subproductions.end(); subProdIter++) { |
---|
743 | SubProduction subProduction = *subProdIter; |
---|
744 | for (vector<ActionStrP>::iterator i = subProduction.actions.begin(); |
---|
745 | i != subProduction.actions.end(); /*nothing*/) { |
---|
746 | if ((*i).action == NULL) { |
---|
747 | i = subProduction.actions.erase(i); |
---|
748 | } else { |
---|
749 | i++; |
---|
750 | } |
---|
751 | } |
---|
752 | } |
---|
753 | } |
---|
754 | #if CONV_DEBUG > 0 |
---|
755 | cout << "createLsystem() end" << endl; |
---|
756 | #endif |
---|
757 | return lsys; |
---|
758 | } |
---|
759 | |
---|
760 | bool GenoConv_F8ToF1::parseInput(const char* src, Lsystem* lsys) { |
---|
761 | //initialize parser |
---|
762 | int yv; |
---|
763 | istringstream input; |
---|
764 | input.str(string(src)); |
---|
765 | ostringstream output; |
---|
766 | yyFlexLexer scanner(&input, &output); |
---|
767 | bool syntaxOk = false; |
---|
768 | void* pParser = prs::ParseAlloc(malloc, lsys, (lsys == NULL), &syntaxOk); |
---|
769 | struct prs::Token t0; |
---|
770 | //t0.strValue = ""; |
---|
771 | memset(t0.strArrValue, 0, 30); |
---|
772 | extern YYSTYPE yylval; |
---|
773 | |
---|
774 | //parse input |
---|
775 | // on EOF yylex will return 0 |
---|
776 | while((yv = scanner.yylex()) != 0) { |
---|
777 | #if CONV_DEBUG > 1 |
---|
778 | cout << " yylex() " << yv << " yylval.strVal " << yylval.strVal << endl; |
---|
779 | #endif |
---|
780 | memset(t0.strArrValue, 0, 30); |
---|
781 | sprintf(t0.strArrValue, yylval.strVal); |
---|
782 | prs::Parse (pParser, yv, t0); |
---|
783 | } |
---|
784 | prs::Parse(pParser, 0, t0); |
---|
785 | prs::ParseFree(pParser, free); |
---|
786 | |
---|
787 | return syntaxOk; |
---|
788 | } |
---|
789 | #undef CONV_DEBUG |
---|
790 | |
---|